Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq787 105 8e-18 seq723 105 8e-18 seq1203 82.4 9e-11 >seq787 Length=122967 Score = 105 bits (116), Expect = 8e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| || | || | || || ||||| ||||||||||| || ||| Sbjct 88211 CTTTGCGGAGCGCCTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCTTCTCAGGCAGCTT 88152 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 88151 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTCACCTTCTCCAACGA 88092 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||| || || ||||| || ||| ||| || Sbjct 88091 GCTCATCAGCCGCGATGAGGGCCTGCACACAGACTT 88056 >seq723 Length=331235 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| |||| || | || ||||| || || ||||| ||| |||||| || ||| Sbjct 27276 CTTTGCGCAGCGCCTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTT 27217 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || || ||||| || ||| |||||| ||||| Sbjct 27216 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGA 27157 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||| ||| | || ||||| || ||| || ||||||||| Sbjct 27156 GCTCATCAGCAGGGATGAGGGCCTGCACACTGACTTTGCGGTG 27114 >seq1203 Length=119104 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCA-TGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||||| ||||||| |||||| || || ||| | ||| | |||| || Sbjct 94136 GCATCAATCTCATCGATGAAGATGATGCAGGGGCTGTGCTTCTTG-GCGGCCGCAAACAG 94078 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 || || || ||| |||| || ||||| ||||| | ||| |||| | | | |||| Sbjct 94077 GTCGCGAACGCGCCTGGCCCCAACACCCACAAAGACCTCATCAAATTCGGAGCCGGAGGT 94018 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || |||||| || || ||| || |||||||| || || || | ||||| || || Sbjct 94017 GTAGAAGAAGGGCACGCCAGCTTCTCCTGCAATGGCGCGAGCAAGCATGGTCTTGCCGGT 93958 Query 9883 ACCTGGC 9889 || ||| Sbjct 93957 GCCGGGC 93951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250826240320