Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq723 156 5e-33 seq787 107 2e-18 >seq723 Length=331235 Score = 156 bits (172), Expect = 5e-33 Identities = 248/349 (71%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 19978 CTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCG 20037 || ||||||||||| ||| || |||||||| || || ||||| || ||||| Sbjct 247657 CTTCTTCGACTTTGACAAGCTGGCAGAGGTGACGCGCGTGGTCACCGCCAACCTGAACAA 247716 Query 20038 CGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCG 20097 ||||||| ||||| ||||| || ||| |||| ||| || || ||||||||| | Sbjct 247717 GATCATCGACGTCAACTTCTACCCCACGGAGTCGGCCCGCCGCTCCAACATGCGCCACAG 247776 Query 20098 GCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATT 20157 ||| |||| | ||||| ||||||||||| ||| ||| || |||||||| | | || Sbjct 247777 GCCCATCGGCCTGGGCGTGCAGGGCCTGGCTGACACCTTCCTGCTGCTCGGCATGCCCTT 247836 Query 20158 CGAC-GATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGG 20216 ||| | | | | | || |||| ||||||| |||||| ||| || | ||| |||| | Sbjct 247837 TGACAGCGACGATGCAGTGC-AGCTGAACAAGGACATCTTTGAGACCATCTACTACGCAG 247895 Query 20217 CCCTCCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGG 20273 | ||||| | ||| || ||||| | ||| ||| |||||||||||| | ||| Sbjct 247896 C---GCTGGAGACCAGCTGCAGGCTGGCCAAGGTGGAGGGCACGTACGAGACGTACGAGG 247952 Query 20274 GGTCGCCCG-CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA 20321 | || || | | ||| || ||||| |||| ||||||||||||||||| Sbjct 247953 GCTCCCCGGTCAGCCG-CGGCATCCTGCAGCAGGACATGTGGGGCGTCA 248000 Score = 152 bits (168), Expect = 6e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 |||| || | || || | ||| || || ||| | |||||| | |||| |||||| Sbjct 246508 CCTCGCCCCACACGTCAGCCAGCCCAGGCGCCTCATTCGGGCAGAACAGGCTCCAGTCGG 246449 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCG 79422 || |||| || || |||||| ||||| |||||||||| |||| ||| |||||| Sbjct 246448 TGTTGCTCTCCACGCGCTGCATGAACAGGTCGTTGATCCACAGG-CCGTAGAACAGGTCG 246390 Query 79423 CGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCG 79482 ||| ||| |||||| | ||| |||||| |||| || || | || | |||||| Sbjct 246389 CGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTTGCGCATGTCCAGCCACTCAAATATGTCG 246330 Query 79483 GCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 246329 GCGTGCCACGGCTCCAGGTAGATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTG 246274 Score = 147 bits (162), Expect = 2e-30 Identities = 228/319 (71%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACG-CCGGCGACCCCTTGAACGTCTCGTA 78746 |||||||||||| | || ||||| || ||| | |||| || |||| | |||||||||| Sbjct 247995 CCCCACATGTCCTGCTGCAGGATGCCG-CGGCTGACCGGGGAGCCCTCGTACGTCTCGTA 247937 Query 78747 AGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGTACACAGC 78803 | |||||| ||||||| || ||| | ||| ||| || |||| ||| | | Sbjct 247936 CGTGCCCTCCACCTTGGCCAGCCTGCAGCTGGTCTCCAGC---GCTGCGTAGTAGATGGT 247880 Query 78804 CTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTC-GTCGAACGAAAGGCCGAGCA 78862 ||| |||||| ||||||| |||| || | | | ||| | ||| || | | |||||||| Sbjct 247879 CTCAAAGATGTCCTTGTTCAGCT-GCACTGCATCGTCGCTGTCAAAGGGCATGCCGAGCA 247821 Query 78863 TCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGC 78922 || |||| || ||||||||||| ||||| | |||| || | ||||||||||||| Sbjct 247820 GCAGGAAGGTGTCAGCCAGGCCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTGG 247761 Query 78923 TCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCG 78982 ||||||| ||| || ||||| ||||| ||||||| ||||||||| | Sbjct 247760 AGCGGCGGGCCGACTCCGTGGGGTAGAAGTTGACGTCGATGATCTTGTTCAGGTTGGCGG 247701 Query 78983 TGACGACCCGAGTCACCTC 79001 |||| || || |||||||| Sbjct 247700 TGACCACGCGCGTCACCTC 247682 Score = 134 bits (148), Expect = 2e-26 Identities = 183/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| |||||||| ||||||||| |||||||||||||||| ||||| |||||||| ||| Sbjct 246274 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC 246333 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 | | || | || || ||||| |||||| || | |||||| |||| |||||| Sbjct 246334 ATATTTGAGTGGCTGGACATGCGCAAGAACCACGGCAAGGAGGAGGCGCGCGCCCGCGAC 246393 Query 19586 CTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGA 19644 || ||| |||||| ||||||| ||||| |||||| || || |||| || || Sbjct 246394 CTGTTCTACGGCC-TGTGGATCAACGACCTGTTCATGCAGCGCGTGGAGAGCAACACCGA 246452 Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 ||| |||| | |||||| | || ||||| || | ||||| | ||||||| ||| Sbjct 246453 CTGGAGCCTGTTCTGCCCGAATGAGGCGCCTGGGCTGGCTGACGTGTGGGGCGAGGAGTT 246512 Query 19705 CAATGAGTTGTAC 19717 | | | ||||| Sbjct 246513 TGAGGCGCTGTAC 246525 Score = 120 bits (132), Expect = 3e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| || || || | || ||||| |||||||| || ||| |||||| ||| ||| Sbjct 27275 TTTGCGCAGCGCCTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTTC 27216 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| ||||| ||||||||||| | ||||| |||||| Sbjct 27215 TGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGAG 27156 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTAT 60143 || || | |||| |||||||| || || ||||| ||| ||| ||| Sbjct 27155 CTCATCAGCAGGGATGAGGGCCTGCACACTGACTTTGCGGTGCTGCTGTAT 27105 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||||| ||||| || || |||| |||||| || || ||||||||||| ||||||| | Sbjct 246086 CCTGGTCCACGTAGCGCGCGGTGTCGTTGAACACGCGCAGCATGGGCACAATGCCGTTGC 246027 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTC 79654 | |||||| || ||| ||| | || | || || ||||| | | ||| | Sbjct 246026 TGGTGCCGTTGGTGCCGCGGATGTAGCTGCCCGTGGCGCGGATGTTGTGGATGCTGATGC 245967 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 |||| || |||| ||||| |||| |||||||||||||| | ||||||||||||| Sbjct 245966 CGATACCTCCGGCAGACTTGCTGATGACAGCGCACTCCTTGAGGGAGTCGTAGATGCCCT 245907 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 |||| ||||| ||| | | || ||||||||| Sbjct 245906 CGATGCTGTCGTTCTTGCTGCACAGCAAGAAGCAGCT 245870 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 20364 CCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGA 20423 || |||| | |||||| |||| || ||||||||||| ||||| ||| ||||| Sbjct 248150 CCAACGGCGTGCGCAACAGCCTGCTGGTGGCGCCCATGCCCACCGCAAGCACCAGCCAGA 248209 Query 20424 TCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACAC 20483 || |||| ||||||||| |||||||| ||||| | |||||||||| |||| || | Sbjct 248210 TCCTGGGCAACAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTGC 248269 Query 20484 TGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTG 20518 || ||| |||||| | |||| ||| |||||||| Sbjct 248270 TGAGCGGCGAGTTCACCGTGGTCAACCAGCACCTG 248304 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||||||||||||| || ||||| || || | ||| | ||| || |||||| Sbjct 247001 GATGCCAGGTTGCACACTGCGGTCTCATCAGGCGCGGTGTACTCCACGATCTCCGTGCAC 246942 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || ||||||||||||| | ||||| |||||||||||| ||| ||| |||| Sbjct 246941 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGCTGTCC 246882 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACG 79224 |||||| |||||| || | |||||||| | ||| || ||| ||| Sbjct 246881 TTGTAGAGCATGTAGGGGTTGCCGGTCTCGATCTGCGCCTCGAGCACG 246834 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGAC-GCCGCGAACGCCAAGTCAAA 19851 ||| |||||||||||| || |||||| |||||||||| || || ||| |||| || Sbjct 246847 CAGATCGAGACCGGCAACCCCTACATGCTCTACAAGGACAGCTGC-AACCGCAAGAGCAA 246905 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTC 19911 ||| ||||| | ||| | ||||||| ||||||||| || || ||| ||||| | Sbjct 246906 CCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTGGAGTACAC 246965 Query 19912 CAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCC 19959 | ||| || ||||| || ||||| || ||||| ||| | ||| ||||| Sbjct 246966 CGCGCCTGATGAGACCGCAGTGTGCAACCTGGCATCCAT-TGCGCTGCC 247013 >seq787 Length=122967 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| || ||||||||||| ||| ||||| || || ||||||||||| ||||| || Sbjct 88181 CGTGGAGGGCATCTTCTTCTCAGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 88122 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||| || || | |||||||||||||| || ||| || |||||||| || Sbjct 88121 CCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCATCAGCCGCGATGAGGGCCTGCA 88065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515420225920