Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq723 131 2e-25 seq1359 120 3e-22 seq817 102 9e-17 >seq723 Length=331235 Score = 131 bits (144), Expect = 2e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 55090 CTTATTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCG 55149 ||| || |||||||||||||| || |||||||| || || || ||||||||| Sbjct 247657 CTTCTTCGACTTTGACAAGCTGGCAGAGGTGACGCGCGTGGTCACCGCCAACCTGAACAA 247716 Query 55150 GGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCG 55209 | |||||||| || | |||||| || || |||| ||| |||||| | || ||| | Sbjct 247717 GATCATCGACGTCAACTTCTACCCCACGGAGTCGGCCCGCCGCTCCAACATGCGCCACAG 247776 Query 55210 GCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTT 55269 |||||||| | | || || |||||| |||| |||| |||| || ||||||| ||||||| Sbjct 247777 GCCCATCGGCCTGGGCGTGCAGGGCCTGGCTGACACCTTCCTGCTGCTCGGCATGCCCTT 247836 Query 55270 CGACTCGGAACCTGCTCGAGAAATTAACCAGGACATC-TTCAGTCGCATCTACTTTGCAG 55328 ||| || ||| | | ||| |||||||| || || | |||||||| |||| Sbjct 247837 TGACAGCGACGATGCAGTGCAGCTGAACAAGGACATCTTTGAGAC-CATCTACTACGCAG 247895 Query 55329 CGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGT 55379 |||| ||| || ||||| | | ||||| || |||||||||| Sbjct 247896 CGCTGGAGACCAGCTGCAGGCTGGCCAAGGTGGAGGGCACGTACGAGACGT 247946 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 ||||| || || ||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 246274 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC 246333 Query 53603 ATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGAC 53662 || | |||| || || |||| ||| || || | || ||| |||| ||| ||| Sbjct 246334 ATATTTGAGTGGCTGGACATGCGCAAGAACCACGGCAAGGAGGAGGCGCGCGCCCGCGAC 246393 Query 53663 CTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA 53721 ||||| ||| || |||||||| ||||| |||||||| ||||||| || || Sbjct 246394 CTGTTCTACGGC-CTGTGGATCAACGACCTGTTCATGCAGCGCGTGGAGAGCAACACCGA 246452 Query 53722 GTGGTACCTGATGTGCCCGAACGAG 53746 ||| |||| | |||||||| ||| Sbjct 246453 CTGGAGCCTGTTCTGCCCGAATGAG 246477 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| |||||| |||||||| ||||| ||||| || |||||| || Sbjct 248155 GGCGTGCGCAACAGCCTGCTGGTGGCGCCCATGCCCACCGCAAGCACCAGCCAGATCCTG 248214 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596 |||||||||||| |||||||| ||||| | |||||||||| ||||||| | | ||| Sbjct 248215 GGCAACAACGAGTGCTTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTGCTGAGC 248274 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCT 55626 || ||||| | || ||||| ||||||| Sbjct 248275 -GGCGAGTTCACCGTGGTCAACCAGCACCT 248303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||||||| || || | ||| | ||| ||||| ||||||||||| | |||||| Sbjct 245870 AGCTGCTTCTTGCTGTGCAGCAAGAACGACAGCATCGAGGGCATCTACGACTCCCTCAAG 245929 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449 ||||| || |||| ||||| | || |||||||| ||| | | ||| |||| Sbjct 245930 GAGTGCGCTGTCATCAGCAAGTCTGCCGGAGGTATCGGCATCAGCATCCACAACATCCGC 245989 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || | |||| ||| || || |||||| | | | || || ||||| ||||| Sbjct 245990 GCCACGGGCAGCTACATCCGCGGCACCAACGGCACCAGCAACGGCATTGTGCCCATGCTG 246049 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 ||||| |||||| |||| || || ||||| |||||| Sbjct 246050 CGCGTGTTCAACGACACCGCGCGCTACGTGGACCAGG 246086 >seq1359 Length=225170 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 117322 GCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAG 117381 ||| || || |||||||| || || ||||| ||||| ||||| || || | || || Sbjct 33637 GCTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCGAACTGTCCGCTGGGGTACAGCAG 33696 Query 117382 GTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCT 117441 ||| ||||||||| ||||||||||| || |||| | || || || || || ||||| Sbjct 33697 GTTGAGGTTGTTGCTGCCCACAAAGTCCTGCGCCAGGCCCACGATGGTGCCCTGCAGGCT 33756 Query 117442 CGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 ||||| || ||||| || || | ||||| ||||||||| |||||||| ||||||| Sbjct 33757 GGCCTCGCCGTGGTGGTAGGCAGAGTGCTCGCTCACGTAGCCGGCCAGCTGTGCCACCT 33815 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 152043 GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAG 152102 || ||| || || |||||||| || ||||||||| || |||||||| ||| | || Sbjct 33634 GGCGCTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCGAACTGTCCGCTGGGGTACAG 33693 Query 152103 GAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAG 152162 ||||||||||||||| |||||| || | ||| |||| ||| || ||||||||||| Sbjct 33694 CAGGTTGAGGTTGTTGCTGCCCACAAAGTCCTGCGCCAGGCCCACGATGGTGCCCTGCAG 33753 Query 152163 ACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCAC 152222 || || || |||||||| || || | ||||| | ||| || |||| ||| ||||| Sbjct 33754 GCTGGCCTCGCCGTGGTGGTAGGCAGAGTGCTCGCTCACGTAGCCGGCCAGCTGTGCCAC 33813 Query 152223 CT 152224 || Sbjct 33814 CT 33815 >seq817 Length=80984 Score = 102 bits (112), Expect = 9e-17 Identities = 176/250 (70%), Gaps = 13/250 (5%) Strand=Plus/Plus Query 158968 CCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCG 159027 || || || | ||| ||||| |||| | ||| || || ||| ||||||||||||| Sbjct 69562 CCTGTTGCCACCACGAAGTCGTCTGCCTTGTCCTGCTGCAGGATGCGCCACATGGCCTCC 69621 Query 159028 ACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG---CTCGATG 159084 ||||| |||| ||||| ||||||||||||||||| |||| ||| || || | || | Sbjct 69622 ACGTAGTCCTTTGCGTGGCCCCAGTCGCGCTTGGCGTCCAGGTTGCCCAGGGACACGCAG 69681 Query 159085 ACTT----TTCCAGACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGCGTCAC-AA 159139 | | |||| ||| | | | |||| | | | ||||||||||| ||||| || Sbjct 69682 TCCTGCAGGCCCAG-CTTGATGCGCGCAGC---AGCCATGGTGATCTTGCGGGTCACGAA 69737 Query 159140 ACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGT 159199 ||| | || || ||| ||||| ||||| ||||| |||||| | || ||||| || Sbjct 69738 GGTCT-CACCACGGCGTGGGGACTCGTGGTTGAACAGGATGCCGTTGCAGCAGAACATGT 69796 Query 159200 TATAGGACTC 159209 | || ||||| Sbjct 69797 TGTACGACTC 69806 Score = 102 bits (112), Expect = 9e-17 Identities = 164/228 (72%), Gaps = 17/228 (7%) Strand=Plus/Plus Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609 |||||||| || |||||||||| | |||||||||| |||||| |||||||||||||| Sbjct 69594 CTGCTGCAGGATGCGCCACATGGCCTCCACGTAGTCCTTTGCGTGGCCCCAGTCGCGCTT 69653 Query 124610 GGCATCCAGGTTTCCGAG---CTCG-ATT--GGCTTGGCCGTCTTGTTCCACTCCGCCAA 124663 ||| |||||||| || || | || | | || | || |||| | | | | || Sbjct 69654 GGCGTCCAGGTTGCCCAGGGACACGCAGTCCTGCAGGCCCAGCTTGATGCGCGCAGC--- 69710 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 | ||| || |||||||| ||||| || ||| ||| || || ||||||||||| Sbjct 69711 AGCCATGGTGATCTTGCGGGTCACGAAGGTCTC---ACCACGGCGTGGGGACTCGTGGTT 69767 Query 124721 GAACAGAATGCCAGTACACGCA-AACATCCCGTACGACTCGCGGTAGT 124767 |||||| ||||| | || ||| ||||| ||||||||| | | ||| Sbjct 69768 GAACAGGATGCCGTTGCA-GCAGAACATGTTGTACGACTCCCTGCAGT 69814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206642606400