Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq723 136 5e-27 seq1064 109 6e-19 seq1359 107 2e-18 seq78 100 3e-16 seq415 95.1 1e-14 seq1203 93.3 5e-14 seq654 91.5 2e-13 >seq723 Length=331235 Score = 136 bits (150), Expect = 5e-27 Identities = 243/344 (71%), Gaps = 18/344 (5%) Strand=Plus/Minus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACG-CCGGAGACCCCGCGAACGTCTCGTA 80597 ||||||||||| ||||||| |||||| | | | |||| || ||| || |||||||||| Sbjct 247995 CCCCACATGTCCTGCTGCAGGATGCCG-CGGCTGACCGGGGAGCCCTCGTACGTCTCGTA 247937 Query 80598 CGGGCCCTCCGTCTTGGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAATGCA 80654 || ||||||| |||||||||| || | ||||| | || |||| || ||| Sbjct 247936 CGTGCCCTCCACCTTGGCCAGCCTGCAGCTGGTCTCCA---GCGCTGCGTAGTAGATGGT 247880 Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGC-GCCT-GTGGGTCGTCGAACGACAAGCCCATC 80712 |||||||| | ||||||||| | || | || | || | | ||| || | || ||| | | Sbjct 247879 CTCAAAGATGTCCTTGTTCAG-CTGCACTGCATCGTCGCT-GTCAAAGGGCATGCCGAGC 247822 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | || ||| ||||||||||||||| ||||| | | |||| || | ||||||| |||| Sbjct 247821 AGCAGGAAGGTGTCAGCCAGGCCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTG 247762 Query 80773 GATCGCTCGGC---CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTG 80829 || || ||| ||||| | ||||| ||||| ||||||| |||||||||| Sbjct 247761 GAGCGGCGGGCCGACTCCG---TGGGGTAGAAGTTGACGTCGATGATCTTGTTCAGGTTG 247705 Query 80830 CGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA 80873 || || || || || || || || || | ||||||||| Sbjct 247704 GCGGTGACCACGCGCGTCACCTCTGCCAGCTTGTCAAAGTCGAA 247661 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 ||| || ||||| | |||| ||||||||||| | |||| || || |||||| ||| Sbjct 246477 CTCATTCGGGCAGAACAGGCTCCAGTCGGTGTTGCTCTCCACGCGCTGCATGAACAGGTC 246418 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG 81305 |||||| ||| || ||||||||||||| |||||||||||| | || ||||| Sbjct 246417 GTTGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTT 246358 Query 81306 GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGA 81365 ||||| || || | || | ||||| || ||||| |||||||| || | ||||| || Sbjct 246357 GCGCATGTCCAGCCACTCAAATATGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGC 246298 Query 81366 CCCCTTGCG 81374 |||||||| Sbjct 246297 GCCCTTGCG 246289 Score = 109 bits (120), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| ||||| |||||||| || ||| |||| | || |||| ||||| |||||||| Sbjct 247002 GGATGCCAGGTTGCACACTGCGGTCTCATCAGGCGCGGTGTACTCCACGATCTCCGTGCA 246943 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || || |||| || || |||||||| | |||||| |||| |||||| ||| Sbjct 246942 CAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGCTGTC 246883 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||||||| |||||| ||| | |||||||||| ||| | || ||| | ||| ||| | Sbjct 246882 CTTGTAGAGCATGTAGGGGTTGCCGGTCTCGATCTGCGCCTCGAGCACGGCAAACCACAG 246823 Query 81087 CT----CGCGCGCCTTGACCACCTTGCGG 81111 || ||||||| |||||||||||| Sbjct 246822 CTGCTGCGCGCGC----ACCACCTTGCGG 246798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| ||||| || || |||||||| ||||| || || ||| || || ||| Sbjct 27275 TTTGCGCAGCGCCTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTTC 27216 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 || | || |||||||| || ||||||||||| ||||| || || | || || |||||| Sbjct 27215 TGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGAG 27156 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGT 64868 || ||| |||| ||||| || ||| || |||||||| Sbjct 27155 CTCATCAGCAGGGATGAGGGCCTGCACACTGACTTTGCGGT 27115 >seq1064 Length=71438 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| || || |||||||| ||||| || ||||||| || Sbjct 27296 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 27355 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| ||||| || || |||| || ||| Sbjct 27356 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTGCGCCTGCGC 27415 Query 27628 GGTGG 27632 ||||| Sbjct 27416 GGTGG 27420 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| ||||||||||| || || |||||||| ||||| || ||||||| || Sbjct 28359 GGCATCCCTCCCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGC 28418 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 28419 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 28478 Query 27628 GGTGGACA 27635 ||||| || Sbjct 28479 GGTGGCCA 28486 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| || || |||||||| ||||| || ||||||| || Sbjct 26183 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 26242 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 26243 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 26302 Query 27628 GGTGG 27632 ||||| Sbjct 26303 GGTGG 26307 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| || || |||||||| ||||| || ||||||| || Sbjct 26738 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 26797 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 26798 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 26857 Query 27628 GGTGG 27632 ||||| Sbjct 26858 GGTGG 26862 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| ||||||||||| || || |||||||| ||||| || ||||||| || Sbjct 27828 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 27887 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || || || || |||| ||||| ||||| || || || || |||| || ||| Sbjct 27888 ACCCTGGCTGATTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 27947 Query 27628 GGTGG 27632 ||||| Sbjct 27948 GGTGG 27952 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || ||||| ||||| || ||||||| || Sbjct 25741 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 25800 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| || || || || || || |||| || || Sbjct 25801 ACCCTGGCTGACTACAACATCCAGAAGGAGTCTACACTGCACCTGGTGCTGCGCCTGCGT 25860 Query 27628 GGTGG 27632 || || Sbjct 25861 GGCGG 25865 >seq1359 Length=225170 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 ||||||| |||||| | ||||||||| ||||| | ||||| |||||||||||||| Sbjct 33815 AGGTGGCACAGCTGGCCGGCTACGTGAGCGAGCACTCTGCCTACCACCACGGCGAGGCCA 33756 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 || ||||||||||| || ||| || ||| ||||||| || || ||||| ||| Sbjct 33755 GCCTGCAGGGCACCATCGTGGGCCTGGCGCAGGACTTTGTGGGCAGCAACAACCTCAACC 33696 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | || | || |||||||| || || ||||| || |||||||| || |||||| Sbjct 33695 TGCTGTACCCCAGCGGACAGTTCGGCACGCGGCTGCAGGGAGGCAAGGACGCCGCGAGCG 33636 Query 32234 CC 32235 || Sbjct 33635 CC 33634 >seq78 Length=354265 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| ||||| |||||||||||||| || || ||||| || ||||| || Sbjct 344465 CAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGCCTCATCTTTGCAGGCAAGCAGCTG 344524 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||| | || || || || | |||||||| || || || || || || Sbjct 344525 GAGGATGGCCGCACCTTGGCTGATTACAACATTCAAAAGGAGTCAACGCTGCACCTCGTG 344584 Query 27616 TTGCGTCT 27623 |||| || Sbjct 344585 CTGCGCCT 344592 >seq415 Length=64367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| ||||||||||| || || ||||| |||||||| || ||||| | || Sbjct 63838 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCCGC 63779 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 63778 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 63719 Query 27628 GGTGG 27632 || || Sbjct 63718 GGCGG 63714 >seq1203 Length=119104 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||||||||| || |||||||| ||||| | Sbjct 90215 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 90156 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||| |||| ||||||||||||||||| Sbjct 90155 GACACCATCGAGAATGTCAAGTCTAAGATTCAGGACAAGGAGGG 90112 >seq654 Length=867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| ||||||||||| || || ||||| || ||||| || ||||| | || Sbjct 376 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 435 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 436 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 495 Query 27628 GGTGG 27632 || || Sbjct 496 GGCGG 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300647692160