Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq233 127 2e-24 >seq233 Length=254456 Score = 127 bits (140), Expect = 2e-24 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 30211 GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30270 |||||| || |||||| ||||||||||| || || || | ||||||||| |||||||| Sbjct 88168 GTAGTCGGCGTGCATGTCTGTGTACTCTGCGCCAAAGTGGCGCCACTGGAAGCCGTACAC 88227 Query 30271 CGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTG 30328 ||| || ||||||||||| ||||||| |||| |||||| | |||| | | | ||| Sbjct 88228 CGGCCCGAGGTCTCCCTCCTCCCTGTGGCTC--AGCCCCACGCTGTCAAGGTACGCCCTG 88285 Query 30329 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGAC 30388 | |||| |||||||||| | || ||||| || || || |||| || || || Sbjct 88286 CTGCTGTTGCCGTCCCAGATGTGCACGCCCTTGTCTTGCAGGTCCTTGGCATTGGTTGAA 88345 Query 30389 CCTCTGACGAACCACAGCAGCTCCTCCACGACG 30421 || | || |||||| |||| |||||| || ||| Sbjct 88346 CCCCGGATGAACCAGAGCAACTCCTCAACCACG 88378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406303625789856