Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq21 358 8e-94 >seq21 Length=95773 Score = 358 bits (396), Expect = 8e-94 Identities = 375/492 (76%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 176617 GTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGT 176676 || |||||||| || || |||||||| |||||||| ||||| ||| | || ||||| ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 176677 GTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTT 176736 || |||||||| || | ||||| || |||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 | || ||||| ||||||||||| ||| | || ||||||||||| ||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || |||||||| ||||| ||||||||||||||||||||| | |||||||| || |||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| ||||| | | ||||||||| | || || | |||||||| | || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 || ||||| | ||| ||| || ||||| ||||||||||||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 176977 TCTGTCTTAG----ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCG 177032 || || | | |||| ||| || | ||||||| || ||| | ||||| Sbjct 17734 TCAGTTGTTGATTCACAA----GGTCGTGTTTTAAACACATGGGCTGACATCATCAACCG 17789 Query 177033 TGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 ||| ||| | |||||||||||||||||||| ||||| ||||||||||||||| | ||| | Sbjct 17790 TGCTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTT 17849 Query 177093 TGCTGCTGCAGA 177104 || ||| ||| Sbjct 17850 AGCATCTGTAGA 17861 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 176479 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538 |||||||||||||| ||| || |||||||||||||| | || || | || || ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 176539 CTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGT 176598 || |||| || |||| ||||| ||||||||||| ||||||||| | || |||||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 176599 ACATTCAACTTTATG 176613 || |||||||| ||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 109 bits (120), Expect = 7e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 176120 AGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTCATGATTC 176179 ||||| |||| ||| | ||| | | ||| | ||||||||||||||| ||||||| | Sbjct 13090 AGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATCATGATCC 13149 Query 176180 CATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATTGCAGCACCACCTGTCG 176239 | | | |||||| | || || ||| | || || || || || || || || | Sbjct 13150 CTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCTCCAGTAG 13209 Query 176240 ATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCT 176299 ||||||| ||||| || || ||||| | || || || | || |||||||||||||||| Sbjct 13210 ATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCT 13269 Query 176300 CAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACA 176339 | || || || || || | |||||||| ||||| || || Sbjct 13270 CTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603484080245760