Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq78 113 1e-19 seq1064 107 4e-18 seq654 98.7 2e-15 seq415 93.3 1e-13 >seq78 Length=354265 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| ||||| ||||| ||||| || | ||| | ||||| Sbjct 344586 AGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGGCCATCC 344527 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| ||||| || ||||| || |||| || ||||||||| Sbjct 344526 TCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 344467 Query 211023 TG 211024 || Sbjct 344466 TG 344465 >seq1064 Length=71438 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| ||||| || ||||| | ||||| Sbjct 27937 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGGCCATCC 27878 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| ||||| || ||||||||||| Sbjct 27877 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 27834 Score = 105 bits (116), Expect = 2e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || |||||||| || || || ||||| | ||||| Sbjct 27405 AGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCC 27346 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| || ||||| ||||| || |||||||| |||| Sbjct 27345 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAA 27300 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 26292 AGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCC 26233 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| || ||||| ||||| || |||||||| |||| Sbjct 26232 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAA 26187 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 26847 AGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCC 26788 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| || ||||| ||||| || |||||||| |||| Sbjct 26787 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAA 26742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 25850 AGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCC 25791 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| ||||| || |||||||| || Sbjct 25790 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 25747 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 28468 AGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCC 28409 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| ||||| || ||||| ||||| Sbjct 28408 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGAGG 28365 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 211006 GAACTC--CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTC 211063 |||||| | ||||||||||| ||||| |||||||| || |||||||| ||| || Sbjct 27532 GAACTCACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTC 27473 Query 211064 AACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| || || |||||||| ||||| | |||||| Sbjct 27472 CACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 27422 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| || |||||||| ||| || |||||| Sbjct 25970 CCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTCCACCTCG 25911 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 25910 AGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 25867 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| |||||||| || |||||||| ||| || |||||| Sbjct 26412 CCCTCCTTGTCCTGAATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTCCACCTCG 26353 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || |||||||| ||||| | |||||| Sbjct 26352 AGTGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 26309 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| |||||||| || |||||||| ||| || |||||| Sbjct 26967 CCCTCCTTGTCCTGAATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTCCACCTCG 26908 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || |||||||| ||||| | |||||| Sbjct 26907 AGTGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 26864 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 211006 GAACTC--CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTC 211063 |||||| | ||||||||||||||||| |||||||| || |||||||| ||| || Sbjct 28064 GAACTCACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTC 28005 Query 211064 AACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 28004 CACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 27954 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || || ||||| || || |||||| Sbjct 25360 CCCTCCTTGTCCTGGATCTTGCTCTTAACGTTCTCAATAGTGTCGGAAGACTCCACCTCG 25301 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| |||||||| || | ||||| Sbjct 25300 AGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATTTGCAT 25257 >seq654 Length=867 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 485 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 426 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| ||||| || ||||||||||| Sbjct 425 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGG 382 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| || |||||||| ||| || |||||| Sbjct 605 CCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTCCACCTCG 546 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 545 AGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 502 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| || |||||||| ||| || |||||| Sbjct 94 CCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCAATGGTGTCGCTGCTCTCCACCTCG 35 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 || ||||| ||||| || || || ||||| |||| Sbjct 34 AGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAA 1 >seq415 Length=64367 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 63729 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 63788 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||||| || || ||||| ||||| || ||||||||||| Sbjct 63789 TCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCAGGAGG 63832 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| |||||||| || || ||||| ||| || |||||| Sbjct 64206 CCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCAATAGTGTCGCTGCTCTCCACCTCG 64265 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 64266 AGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 64309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159131682963320