Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1022 96.9 8e-15 seq88 96.9 8e-15 seq21 96.9 8e-15 >seq1022 Length=134933 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/104 (83%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 130810 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 130868 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||||||||||| |||| ||| ||| Sbjct 130869 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAAT 130912 >seq88 Length=65872 Score = 96.9 bits (106), Expect = 8e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| || || |||||||| ||||||||||| || ||||| Sbjct 60686 GAAAATTTGACCATCTGTAATAGAAATTACGTTTGTAGGAATATAAGCAGATACGTCACC 60627 Query 4530 TGCTTGTGTTTCGACAACAGG 4550 | |||| ||||| |||||||| Sbjct 60626 TTCTTGAGTTTCAACAACAGG 60606 >seq21 Length=95773 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/104 (83%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 8167 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 8109 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||||||||||| |||| ||| ||| Sbjct 8108 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAAT 8065 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/104 (83%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 87686 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 87744 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||||||||||| |||| ||| ||| Sbjct 87745 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAAT 87788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192510297909392