Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq43 109 2e-19 >seq43 Length=130465 Score = 109 bits (120), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 54972 AGCTTCGCCATGTCCGCGCCAGATGGTGCTGTGACCCGTGATCAGGTGACTGCGATGCAG 55031 |||||| |||| || || ||||| ||||| || ||||| | ||| | ||| || || Sbjct 118861 AGCTTCCCCATCAAGGCCCCTGATGGCGCTGTCACGCGTGACGATGTGTCCGCGCTG-AG 118803 Query 55032 GCC-CTGGAACTGTGGTTACTGTATCAACGTGAGTGGTGTGAGCACAAGCCTTCCGTCAC 55090 | ||||| ||||| | || || || | ||||| ||||||||||| | |||| Sbjct 118802 CCAGCTGGAGCTGTGCCTGGCCTACCAGCGGCACTGGTGCGAGCACAAGCCCAGCATCAC 118743 Query 55091 TGTCACCGTGCGTGACGAGGAATGGCTGTCGGTGGGCGCCTGGGTCTATGAGCACTTCGA 55150 |||||| ||||| || ||||| ||| || |||||||| |||||||| ||||||||| Sbjct 118742 TGTCACTGTGCGCGAGGAGGAGTGGATGGATGTGGGCGCATGGGTCTACCGGCACTTCGA 118683 Query 55151 CGAGGTGTCGGG 55162 |||||| || || Sbjct 118682 CGAGGTCTCAGG 118671 Score = 89.7 bits (98), Expect = 2e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 53966 CAGCAAGGTCCGGCCCGCCGGTGCGCGCCTCAAGATCTTCGGCGGTCGTGCTTCGGGCCC 54025 ||||||| | || || ||||| |||||||||| ||| ||||| || || || ||||| Sbjct 122233 CAGCAAGCTGCGCGCCAAGGGTGCCCGCCTCAAGACCTTTGGCGGCCGCGCCTCTGGCCC 122174 Query 54026 GGAGCCGCTCAAGCGTCTGTTCAAATTCACCGTCGATACCTTCCAGCGCGCGAAAGGTCG 54085 || || ||| || |||||| || | ||| | | ||||||| ||| | || || Sbjct 122173 TGAACCCCTCGAGGCGCTGTTCCTGTTTGCGGTCAACATGTTCCAGCACGCAAGGGGCCG 122114 Query 54086 CAAGCTGAACAGCATCGAGGTTCATGACCTGCTGTGCATGATCGGTGAGATCGTCGTGGT 54145 ||||| | | |||| || |||||| |||||| | | | ||||| || ||||| Sbjct 122113 GCGGCTGACCCCGCTGGAGGCGCACGACCTGGTGTGCAAGGTGGCGGAGATTGTGGTGGT 122054 Query 54146 GGGCGGTGTGCG 54157 |||||| ||||| Sbjct 122053 GGGCGGCGTGCG 122042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187286557480448