Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq21 535 5e-147 >seq21 Length=95773 Score = 535 bits (592), Expect = 5e-147 Identities = 731/1018 (72%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 185957 ATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 186016 |||||| |||| | ||||||||| | | ||||| || || ||||| || ||||| Sbjct 40261 ATGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 186017 TGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAAC 186076 || | ||||||||||| ||| || | ||| | || || ||| ||||||| ||||| Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 186077 GTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTT 186136 ||||| || |||||||| || ||||| || |||||||| | || ||| ||| || Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-T 186195 | || || ||||| ||||| ||||| || ||||| || || || || | ||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTC-ATTATTATTCTTAT 40499 Query 186196 GGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATT 186255 ||||||| || ||||||| ||| | | || |||| ||| | || || | |||| | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 186256 TTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCA 186315 |||| || | || || | |||| | | || || |||||| | || || |||||||| Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 186316 GTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCT 186375 ||| ||| | ||||| |||||||| ||||||||||| | |||||| ||||| | Sbjct 40620 CACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTT 40679 Query 186376 TTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCT 186435 ||||| |||||| | || ||||| | ||||| || |||||||| || || | Sbjct 40680 TTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTT 40739 Query 186436 TTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGT 186495 |||| || || || ||||| | || | |||||| ||||||| || || |||||||| | Sbjct 40740 TTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACAT 40799 Query 186496 TGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAA 186555 | || |||||||| ||||||||||| || ||| | | |||| |||| | | | || | Sbjct 40800 TAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 40859 Query 186556 TCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCA 186615 | || |||| |||||| ||||| || | | ||||||||| || |||||||||||| Sbjct 40860 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCC 40919 Query 186616 AAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCT 186675 ||||| | | || |||| |||||||| || || ||||| ||||||||| | |||| Sbjct 40920 GTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCT 40979 Query 186676 GGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCT 186735 ||||||| || || || |||| || || || ||||||||||| ||||| ||| | | Sbjct 40980 GGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTAT 41039 Query 186736 TTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACC 186795 | ||||| || | || || |||| ||| | ||||| || ||||| | ||||| ||| Sbjct 41040 TAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACT 41099 Query 186796 TTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGA 186855 | |||||||||||||| ||| || || | | || || || || || |||||||| | Sbjct 41100 TACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAA 41159 Query 186856 CGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGG 186915 | |||||||| || ||||| |||| ||||||||| | ||||| |||||||| | | Sbjct 41160 CTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 41219 Query 186916 ATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 | |||||||| ||| || ||||| ||||||||||| || || | || |||||||| Sbjct 41220 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Score = 383 bits (424), Expect = 2e-101 Identities = 365/467 (78%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 183700 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 || |||||||| || || ||||| || |||||||| ||||||||| | ||||| |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 183760 GTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTT 183819 || || |||||||| | ||| ||| ||||||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 183820 CGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 183879 |||||||| ||||| || || ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 183880 ACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCG 183939 || |||||||| || || || || || |||||||||||| | |||||||| || ||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 183940 TTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGG 183999 || ||||| |||||||| | ||||||||| | |||||||||||||| || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 184000 TTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAG 184059 || |||||| | ||| || |||||||| || ||||| || ||||| ||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 184060 TCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCT 184119 || | ||||| ||||||||||| | ||||| ||||| ||| | ||||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 184120 GGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCC 184166 | || |||||||| |||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 183424 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTAC 183483 ||||| || || |||||||| || || | ||||||||| | || ||||||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 183484 CAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAA 183543 ||| | | || | |||||| || | || ||| ||| ||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 183544 TTGTCTTACCGTCTCGGTATGC 183565 || ||||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| || ||||| || ||| | ||||| | || | ||||||||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || || | || | || || || | |||||| | || ||| |||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || ||||| || ||||| || || ||| |||| || | | || |||||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCA 183422 ||||||||||||||| || |||||| |||| ||||| || || || || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 183562 ATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTC 183621 |||||||||||||| ||| ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 183622 CTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 | |||| ||| |||| ||||||||||| ||| |||||||| | ||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622059762596160