Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq21 563 1e-155 >seq21 Length=95773 Score = 563 bits (624), Expect = 1e-155 Identities = 742/1025 (72%), Gaps = 10/1025 (1%) Strand=Plus/Plus Query 165150 TGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 165209 ||||| |||| | ||| |||||| | |||||||||||| ||||| || ||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 165210 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 165269 || |||||||||||||| ||| || |||| || || |||||| ||||||| || ||| Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 165270 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 165329 || || || |||||||| || || | || | ||| || | || ||| ||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 165330 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT-ATG 165388 | ||||| |||||||| || || ||| || ||||| || || || | |||| ||| Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 165389 GGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTT 165448 |||||| || ||||||| || || | || ||||| ||| | || || | ||||| || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 165449 TGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC 165508 ||| || | || || | |||| | || || |||||| | || || |||||| | || Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 165509 ACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 165564 ||| || ||| | ||||||||||||||||||||||| || | ||||||||||| Sbjct 40621 ACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTG 40676 Query 165565 TATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGT 165624 | || ||| || || | || || || | |||||||| |||||||| ||||| Sbjct 40677 TTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTA 40736 Query 165625 CGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGA 165684 || || || || || |||||||| || | | ||| ||||||| || |||||||||| Sbjct 40737 GTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGA 40796 Query 165685 CGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTG 165744 | | || || || || |||||||| || || ||| | ||||| | || || | | || Sbjct 40797 CATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 40856 Query 165745 CCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTT 165804 | ||||| |||| ||| || || || || || | |||||||||||| |||||||| | Sbjct 40857 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACAT 40916 Query 165805 TCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTT 165864 || |||||| | ||||| | || |||||||| || ||||| ||||| ||||||| Sbjct 40917 TCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTT 40976 Query 165865 TCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGC 165924 ||||||| || ||||||||| |||||||| || || ||||||||||||||||||||| Sbjct 40977 TCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGT 41036 Query 165925 TCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCA 165984 | || ||||| || | ||||| |||| | | |||||| | ||||| | || || | Sbjct 41037 TATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAA 41096 Query 165985 ATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTG 166044 | | ||||||||||| || || || || || ||| | |||||||| || |||||||| | Sbjct 41097 ACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCG 41156 Query 166045 AAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTG 166104 |||| |||||||| ||||| || | | |||||||| | ||||| ||| ||||| || Sbjct 41157 AAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTC 41216 Query 166105 TAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCAC 166164 ||||||||| || || || || |||||||||||||| || || | || ||||| | Sbjct 41217 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 41276 Query 166165 TTTAA 166169 | ||| Sbjct 41277 TATAA 41281 Score = 392 bits (434), Expect = 4e-104 Identities = 367/467 (79%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 164432 GTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 164491 || ||||| ||||| || ||||| || |||||||| ||||| ||| | || ||||| ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 164492 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTT 164551 || ||||| ||||| | ||| ||| ||||||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 164552 CGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAA 164611 ||||| || || ||||| || || ||| | || ||||| || ||||| ||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 164612 ACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCC 164671 || ||||||||||| ||||| |||||||||||||||||| | || |||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 164672 TTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 164731 ||||||||||| ||||| | ||||||||| | || || ||||| ||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 164732 TTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 164791 || |||||| | || || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 164792 TCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCT 164851 || | | ||| || |||||||| | ||||| ||||| ||| | ||||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 164852 GGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCC 164898 | || |||||||| |||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 172 bits (190), Expect = 6e-38 Identities = 182/237 (77%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 |||| || |||||| | ||| | ||||| || || || ||||| || |||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCAT 164037 || || | ||||| |||| | | | | || ||| || ||||||||||| ||||| Sbjct 13134 GGTGTGATCATGAT-CCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCAT 13192 Query 164038 CGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTA 164097 || ||||||||| || || |||||||| ||||| || || || ||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 164098 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCA 164154 |||||||||||||||||||||||||| | ||| |||| ||||||||||||||||| Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 164294 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 164353 ||||||||||||||| ||||| |||||||| || || || || || | ||| || ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 164354 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGA 164413 | |||| ||| |||| ||||||||||||||||| | |||||| | || || || ||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 164414 ACCTTCAACTACATG 164428 || ||||||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215 |||||||| || |||||||| || | | || || ||| | |||||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 164275 ||| | | || | |||||| | | || |||| |||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 164276 CTTTCTTACCGTCTTGGTATGC 164297 | ||||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557644864109760