Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq21 590 7e-164 >seq21 Length=95773 Score = 590 bits (654), Expect = 7e-164 Identities = 747/1019 (73%), Gaps = 6/1019 (1%) Strand=Plus/Plus Query 178836 TGGTTTGATGTACTC-GATGACTGGCTTAAG-CGTGATCGGTTCGTTTTTGTTGGTTGGT 178893 |||||||||| || | ||||||||| ||| | | || || ||||| ||||| ||||||| Sbjct 40262 TGGTTTGATG-ACGCTGATGACTGG-TTACGTCAAGACCGTTTCGTATTTGTAGGTTGGT 40319 Query 178894 CAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAA 178953 ||||||||||||| || ||| ||| ||| | ||||| || |||||| | || || |||| Sbjct 40320 CAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAA 40379 Query 178954 CATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATT 179013 | || || || || |||||||| || ||| | ||| |||| || | || || ||||| | Sbjct 40380 CTTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACT 40439 Query 179014 TCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTC-TA 179072 || | |||||||| || ||||| ||||| || | | | ||| || || || ||| || Sbjct 40440 TCTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCATTA-TTATTCTTA 40498 Query 179073 TGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCT 179132 ||||||||||||||||| || ||||| || ||| ||| | || || ||||| | Sbjct 40499 TGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACA 40558 Query 179133 TTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 179192 ||||| || | || ||| | || | | | || || |||||| | || || |||||||| Sbjct 40559 TTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATT 40618 Query 179193 GCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTC 179252 |||||| ||| | |||||||||||||| || || ||||| | ||| |||||||| Sbjct 40619 GCACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTT 40678 Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 ||||| || || || | || || || | ||||| || ||||||||||| || Sbjct 40679 TTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGT 40738 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| ||||| || || ||||| || | | ||| | || || || || |||||||| Sbjct 40739 TTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACA 40798 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 | ||||| ||||| ||||||||||| || ||| | | || | || || | ||||| Sbjct 40799 TTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 40858 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 ||||| |||||||| || || |||||| | |||||||| |||| |||| |||||| Sbjct 40859 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTC 40918 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 ||||| | || || |||| || || || || || ||||| ||||| ||||||||| Sbjct 40919 CGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTC 40978 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 ||||| || || |||||| | || ||| || || |||||||| || ||||||||||| Sbjct 40979 TGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTA 41038 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAAC 179672 || ||||| || | || || |||| ||| |||||| || ||||| | || || ||| Sbjct 41039 TTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAAC 41098 Query 179673 CTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAG 179732 | | ||||||||||| || |||||||| || | || || || || || |||||||| Sbjct 41099 TTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAA 41158 Query 179733 ACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTC 179792 || |||||||| || || || |||| ||||||||| | |||||||||||||| | Sbjct 41159 ACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 41218 Query 179793 GATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || |||||||| ||| || ||||| |||||||||||||| || | || |||||||| Sbjct 41219 GACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Score = 392 bits (434), Expect = 4e-104 Identities = 367/467 (79%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 178102 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGT 178161 || |||||||| || || ||||| || |||||||| ||||||||||| || || |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 178162 GTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTT 178221 || ||||||||||| | ||| ||| ||||||||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 178222 CGTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 178281 |||||||| || || |||||| | ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 178282 ACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 178341 || ||||||||||| || || || |||||||| ||||| | |||||||||||||| || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 178342 TTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 178401 ||||||||||| ||||| | ||||||||| | || || ||||| ||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 178402 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 178461 ||||||||| | ||| || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 178462 TCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCT 178521 || | | ||| || || || | ||||| ||||| ||| | ||||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 178522 GGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCC 178568 | ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 172 bits (190), Expect = 7e-38 Identities = 182/237 (77%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || |||||| | ||| | || || || | || ||| | || |||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 ||||| | ||||||||||| | | ||||| || || || |||||| |||||||| | Sbjct 13134 GGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCAT 13192 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 |||||||||||| || || ||||| || |||||||| || || ||||||| | | || Sbjct 13193 CGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 13252 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCA 177824 || ||||||||||| ||||||||||| |||||| |||| |||||||| ||||| || Sbjct 13253 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 177826 TTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTC 177885 ||||| || || |||||||| |||||| | ||||||||| | ||||| |||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 177886 CAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAA 177945 ||| | | | | |||||| | | ||||||| ||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 177946 CTTTCTTACCGCCTAGGTATGC 177967 | |||||||| ||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 177964 ATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTC 178023 |||||||| ||||| |||||| |||||||| ||||| || || || ||||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 178024 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGC 178083 | | || ||| |||| ||||||||||||||||||| |||||| | ||||| || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 178084 ACCTTCAACTACATG 178098 || ||||||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596297003146880