Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq21 518 4e-142 >seq21 Length=95773 Score = 518 bits (574), Expect = 4e-142 Identities = 739/1030 (72%), Gaps = 14/1030 (1%) Strand=Plus/Plus Query 170592 TGGTTCGATGTCCTGGATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGG 170648 ||||| |||| | ||||||||| | |||| || || || |||||||| || ||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTT---ACGTCAAGACCGTTTCGTATTTGTAGGTTGG 40318 Query 170649 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACG 170708 || || |||||||||||||| ||| || ||||| | || || ||| |||| || || Sbjct 40319 TCAGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACA 40378 Query 170709 ACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAAT 170768 || ||||| ||| ||||| || || || | || | ||| ||| | |||||| ||| Sbjct 40379 ACTTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAAC 40438 Query 170769 TTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 170828 ||| | || || || || ||||| ||||| | ||||| || || || || | ||| Sbjct 40439 TTCTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTT 40497 Query 170829 -TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAA 170887 |||||||| || |||| || ||||| || |||| ||| | || || | |||| Sbjct 40498 ATGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGAC 40557 Query 170888 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAAT 170947 ||||| || | || || | |||| | | || || |||||| | || || |||||||| Sbjct 40558 ATTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAAT 40617 Query 170948 CAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGT 171007 ||| ||| | | || |||||||| || ||||| || | |||||| ||||| Sbjct 40618 TGCACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGT 40677 Query 171008 GTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTC 171067 ||||| || ||| | || || || | || || ||| |||||||||| |||||| Sbjct 40678 TTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAG 40737 Query 171068 CTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGAC 171127 ||||| ||||| || |||||||| || | | ||| | |||||||| || |||||||| Sbjct 40738 TTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGAC 40797 Query 171128 ACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGC 171187 | | || ||||| ||||||||||||||||| ||| | | || | ||| || | | ||| Sbjct 40798 ATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 40857 Query 171188 AATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTT 171247 ||||| |||| ||| || || || || || | ||||||||||||| |||||||| || Sbjct 40858 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATT 40917 Query 171248 TAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTT 171307 |||||| || | ||||| | ||||| || || |||||||| ||||| || ||||| Sbjct 40918 CCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTT 40977 Query 171308 CTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCT 171367 |||||| || ||||||||| | || ||| || || |||||| | || ||||||||| | Sbjct 40978 CTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTT 41037 Query 171368 GTTTGTTCCTGTCATGGGTCTTTGG--GTCAGTAGTCTGGGGATTATTGGTCTTGCTCTT 171425 || ||||| || | || || ||| ||| | | ||| | || ||||| | |||| | Sbjct 41038 ATTAGTTCCGGTAACAGGACTATGGATGTCTG-CGATTGGTG-TTGTTGGTTTAGCTC-T 41094 Query 171426 AATCTTA-GGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTT 171484 || |||| | |||||||| |||||| || || | | || || ||||| |||||||| Sbjct 41095 AAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTT 41154 Query 171485 CGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACC 171544 ||| || |||||||| || || || |||| ||||||||| ||||||| |||||||| | Sbjct 41155 CGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGC 41214 Query 171545 AGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGC 171604 |||||||||||| ||| || || ||||| || ||||| |||||||||| || || Sbjct 41215 TCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGC 41274 Query 171605 ACTTTGATTT 171614 || | |||| Sbjct 41275 TCTATAATTT 41284 Score = 387 bits (428), Expect = 2e-102 Identities = 366/467 (78%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 169856 GTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGA 169915 || ||||||||||| || ||||| || |||||||| ||||||||| | ||||| || || Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 169916 GTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTC 169975 || |||||||| || | || || ||||||||| | || ||||| | | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 169976 CGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 170035 |||||||| || || ||||| || ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 170036 ACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 170095 || ||||||||||| ||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 170096 TTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGG 170155 ||||||||||| |||||| | ||||||||| | || || ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 170156 TTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAG 170215 ||||| ||| | ||| | || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 170216 TCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCT 170275 || | | ||| || |||||||| | ||||| ||||| ||| | ||||||||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 170276 GGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCC 170322 | || |||||||| |||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 149 bits (164), Expect = 7e-31 Identities = 179/239 (75%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 |||| || |||||| | ||| | || || ||||| |||||| | || |||||||||| Sbjct 13074 TGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 13133 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTT--GT-TTCATCATCGCCTTC 169459 || || | |||||||| | | | | | | | |||| || ||||||||||| ||| Sbjct 13134 GGTGTGATCATGATCCC-TACATTATT--AACTGCTACTTCAGTATTCATCATCGCTTTC 13190 Query 169460 ATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATG 169519 |||| |||||| || || || ||||| || ||||| || || ||| ||||||| | | Sbjct 13191 ATCGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTA 13250 Query 169520 TATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCA 169578 || || ||||||||||||||||||||||| || || |||| ||||| |||||||| || Sbjct 13251 TACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 169580 TTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTC 169639 ||||| || || |||||||| || | | ||||| ||||| |||||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 169640 CAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 169699 ||| | | || | |||||| || | || |||| |||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 169700 TTGTCCTATCGTCTGGGTATGC 169721 || || || ||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 109 bits (120), Expect = 7e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 169718 ATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTC 169777 ||||| |||||||| ||| ||||||||||| || ||||| || || | ||||| ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 169778 CTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGA 169837 | ||||||| | || ||||| || |||||||||| ||||||| | ||||| || ||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 169838 ACCTTTAACTACATG 169852 || || |||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592188273407360