Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1064 113 9e-20 seq415 102 2e-16 seq286 102 2e-16 seq654 98.7 2e-15 seq78 91.5 3e-13 seq1359 89.7 1e-12 seq52 89.7 1e-12 seq1211 87.8 4e-12 seq1203 87.8 4e-12 seq1233 86.0 1e-11 seq1201 86.0 1e-11 seq1159 86.0 1e-11 seq312 86.0 1e-11 >seq1064 Length=71438 Score = 113 bits (124), Expect = 9e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| |||| |||| || || ||||||||||||||||| Sbjct 26307 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26248 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || |||||| ||| Sbjct 26247 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 26188 Query 282993 ATACC 282997 || || Sbjct 26187 ATGCC 26183 Score = 113 bits (124), Expect = 9e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| |||| |||| || || ||||||||||||||||| Sbjct 26862 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26803 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || |||||| ||| Sbjct 26802 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 26743 Query 282993 ATACC 282997 || || Sbjct 26742 ATGCC 26738 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || ||||||||||||||||| Sbjct 27420 CCACCGCGCAGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 27361 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || |||||| ||| Sbjct 27360 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 27301 Query 282993 ATACC 282997 || || Sbjct 27300 ATGCC 27296 Score = 105 bits (116), Expect = 1e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| |||| |||| || || ||||||||||||||||| Sbjct 28483 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 28424 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || ||||| |||||||| || || || || |||||||||| || || ||||| Sbjct 28423 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 28371 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || ||||||||||| ||||| Sbjct 27952 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 27893 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||||||||| || || || || |||||||||| || || |||||| Sbjct 27892 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCA 27839 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 25865 CCGCCACGCAGGCGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 25806 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||||||||| || || || || || ||||||| || || |||||| Sbjct 25805 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCA 25752 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| |||||| ||||| || ||| | || |||||||| |||| || || | Sbjct 25361 ACCCTCCTTGTCCTGGATC-TTGCTCTTAACGTTCTCAATAGTGTCGGAAGACTCCACCT 25303 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 25302 CGAGGGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATTTGCAT 25257 >seq415 Length=64367 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || ||||||||||||||||| Sbjct 63714 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 63773 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||||||||||| || || |||||| Sbjct 63774 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCA 63827 >seq286 Length=93241 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 316192 TGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGT 316251 |||||||||| ||||| ||| |||| || || | |||||||||||| |||||||||||| Sbjct 25713 TGGATGTACTCGTTGGGGGTCTTGTCCAGGTGCTGCTCGATGTGGTGAAAAGCGTGCTGT 25772 Query 316252 GCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCATC 316311 |||||||| || | |||| || || |||||||| ||| | || | ||| | || || Sbjct 25773 GCCACGTAGGCGATGCGCAGGTTGGGGTGCTTCCACACGGTGCCCTCAGTGGCCTCGGTC 25832 Query 316312 TGCCCTGTTAGCAC 316325 | || || ||||| Sbjct 25833 TCGCCGGTCAGCAC 25846 >seq654 Length=867 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 500 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 441 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||||||||||| || || |||||| Sbjct 440 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCA 387 >seq78 Length=354265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || || || | ||| || ||||| |||||||| ||||| | |||||| Sbjct 344592 AGGCGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGG 344533 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || || |||||||| | || || ||||| |||||||||||| Sbjct 344532 CCATCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACCCTCC 344473 Query 283002 TTGTCTTG 283009 ||||| || Sbjct 344472 TTGTCCTG 344465 >seq1359 Length=225170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 273791 CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACC-CTCGGGCA 273849 |||||| ||||| ||||||||| || ||||||| || || ||||| || || ||| | Sbjct 33631 CCTGGCGCTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCGAACTGTCCGCTGGGGTA 33690 Query 273850 GTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCT 273909 ||| ||| | ||||||||| || || | ||||| |||| |||||| || |||| Sbjct 33691 C-AGCAGGTTGAGGTTGTTGCTGCCCACAAAGTCCTGCGCCAGGCCCACGATGGTGCCCT 33749 Query 273910 GAAGGGATACCTCGCCGTGGTGATAGGC 273937 | ||| ||||||||||||| ||||| Sbjct 33750 GCAGGCTGGCCTCGCCGTGGTGGTAGGC 33777 >seq52 Length=499512 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 167119 CGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAACC 167178 ||||||||||||| ||||||||||| || ||||||| || |||||||||||||||| || Sbjct 488431 CGCCATAGCTCAGCTGGTTAGAGCGCACGGCTGTTAACCGTGAGGTCGTCGGTTCGATCC 488490 Query 167179 CGACTGG 167185 ||||||| Sbjct 488491 CGACTGG 488497 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 167290 CGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAACC 167349 ||||||||||||| ||||||||||| || ||||||| || |||||||||||||||| || Sbjct 488431 CGCCATAGCTCAGCTGGTTAGAGCGCACGGCTGTTAACCGTGAGGTCGTCGGTTCGATCC 488490 Query 167350 CGACTGG 167356 ||||||| Sbjct 488491 CGACTGG 488497 >seq1211 Length=79214 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| || ||| ||||| || || | ||||| ||||| |||| || || | Sbjct 78891 ACCCTCCTTGTCCTGAATC-TTGCTCTTGACATTCTCGATGGTGTCGGAAGACTCCACCT 78833 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 |||| ||||| ||||| || |||| ||||| ||||| ||||||||| || Sbjct 78832 CGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATTGTC 78783 >seq1203 Length=119104 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| | || || | ||||| ||||| |||| || || || Sbjct 90111 ACCCTCCTTGTCCTGAATCTTAGACTTGACATTCTCGATGGTGTCAGAAGACTCCACCTC 90170 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||| ||||||| ||||| ||||| |||||||| || Sbjct 90171 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 90218 >seq1233 Length=491012 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 487029 TAGTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCCGGGTTCAATTCCC 486975 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 490766 TAGTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCTGGGTTCAATTCCC 490712 >seq1201 Length=1696 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 624 TAGTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCCGGGTTCAATTCCC 678 >seq1159 Length=299112 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 27011 TAGTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCCGGGTTCAATTCCC 27065 >seq312 Length=137186 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 91827 TAGTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCCGGGTTCAATTCCC 91881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046720853278672