Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1211 87.8 4e-12 seq1203 84.2 5e-11 seq1064 84.2 5e-11 >seq1211 Length=79214 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||||||||||||||| || ||| Sbjct 78790 CAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 78849 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| ||||| |||||||||||||| || || Sbjct 78850 ACCATCGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGG 78890 >seq1203 Length=119104 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 90212 CAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 90153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| ||||| |||||||||||||| || || Sbjct 90152 ACCATCGAGAATGTCAAGTCTAAGATTCAGGACAAGGAGGG 90112 >seq1064 Length=71438 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 25260 CAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 25319 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || |||||||| || ||||| |||||||| || || Sbjct 25320 ACTATTGAGAACGTTAAGAGCAAGATCCAGGACAAGGAGGG 25360 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| ||||||||||| ||| ||| Sbjct 26312 CAGATCTTTGTGAAGACTCTGACCGGCAAGACCATCACACTCGAGGTGGAGAGCAGCGAC 26371 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| |||||||| || |||||||||||||| || || Sbjct 26372 ACCATTGAGAACGTGAAGAGCAAGATTCAGGACAAGGAGGG 26412 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| ||||||||||| ||| ||| Sbjct 26867 CAGATCTTTGTGAAGACTCTGACCGGCAAGACCATCACACTCGAGGTGGAGAGCAGCGAC 26926 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| |||||||| || |||||||||||||| || || Sbjct 26927 ACCATTGAGAACGTGAAGAGCAAGATTCAGGACAAGGAGGG 26967 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || || || ||||| ||||||||||| ||| ||| Sbjct 27425 CAGATCTTTGTGAAGACTCTGACTGGCAAGACCATCACGCTCGAGGTGGAGAGCAGCGAC 27484 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| |||||||| || |||||||||||||| || || Sbjct 27485 ACCATTGAGAACGTGAAGAGCAAGATTCAGGACAAGGAGGG 27525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203710101601392