Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq82 114 3e-20 seq847 109 1e-18 seq833 109 1e-18 >seq82 Length=1542430 Score = 114 bits (126), Expect = 3e-20 Identities = 311/469 (66%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| ||||| || |||| || | || || ||||| |||| || || || ||| Sbjct 614345 TTTGCAGAGCGGCTTGTCGGCTTTGCTTGCGTAGAAGGCATTCACTTCAGTGGAAGCTTC 614286 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT--AACG 230290 ||| |||| || ||||| ||| | ||| | |||||||| || | | || || | Sbjct 614285 TGCTCCATTTTCTGGCTCAAGAAAAGGGGTCTCATGCCTGGACT--GACATTCAGCAATG 614228 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGC 230350 || | ||||| | || ||||| | ||| | | || | | || ||||| ||| Sbjct 614227 AGCTGATCAGCAGAGATGAGGGCTTGCATACAGACTTTGCCTGCCTACTGTATAGCCAGC 614168 Query 230351 TCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGTTGAAAAC 230409 || || || | ||| |||| || | ||| || || |||||||||| ||| Sbjct 614167 TCAGAAATCAGTTGCCACAAGAGAGAGT-ACACACCATTGTTGCAGAAGCAGTAGAACTT 614109 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | |||||| |||||| ||| | | ||| | || | |||||||| || || || Sbjct 614108 GAGCATGAGTTCTGTTGTGAGGCTCT-CAGTGTATCGCTGGTAGGCATGAATGCAGATCT 614050 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||| ||| | || || || || || | | || |||||||| | ||||| Sbjct 614049 GATGTCACAGTATATCAACTTTGTGGCTGATCGGTTGCTGGTAGCACTTGGGTGTGAGAA 613990 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 ||||| || | || || |||| | |||||| | || || || ||||| ||||| Sbjct 613989 GCTGTACCACACAGCAAATCCTTTTGACTGGATGGAGATGATATCCCTCCAAGGCAAGAC 613930 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||| ||||| || || || ||||||||||| | ||||||| ||| Sbjct 613929 CAATTTCTTTGAGCGCCGAGTGGGTGACTATCAGCGCGCTGGTGTCATG 613881 >seq847 Length=8161804 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 318995 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 319054 |||| ||||| ||||| || ||||| ||| || | ||||| ||| |||| | || | Sbjct 6244829 TGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAAGTGCT 6244770 Query 319055 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 319114 ||| |||||||||||||| ||||| || ||||| || | ||||| |||||| ||||||| Sbjct 6244769 GCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTGCTTCC 6244710 Query 319115 AAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCC 319174 | ||| | || ||| |||| | || ||||||| ||| || | |||| || | Sbjct 6244709 AGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGACTTGC 6244650 Query 319175 CCGCACCGTT 319184 | ||||| || Sbjct 6244649 CAGCACCATT 6244640 >seq833 Length=348647 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 318995 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 319054 |||| ||||| ||||| || ||||| ||| || | ||||| ||| |||| | || | Sbjct 99271 TGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAAGTGCT 99330 Query 319055 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 319114 ||| |||||||||||||| ||||| || ||||| || | ||||| |||||| ||||||| Sbjct 99331 GCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTGCTTCC 99390 Query 319115 AAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCC 319174 | ||| | || ||| |||| | || ||||||| ||| || | |||| || | Sbjct 99391 AGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGACTTGC 99450 Query 319175 CCGCACCGTT 319184 | ||||| || Sbjct 99451 CAGCACCATT 99460 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 319858 GGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCG 319917 ||||| || || | ||| || || |||| | | ||| ||||| || || || || ||| Sbjct 100869 GGGAAGCCCTCCAACTGCCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCG 100928 Query 319918 TTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGA 319977 || || || |||||||||||||| || || || ||||||| | || | |||||| || Sbjct 100929 TTGGGGCCGCACAGACCGTAGCGCTTGCCACGCTTCAGGTGAAGGCGGGCGTTGTTGAGC 100988 Query 319978 AGAATTTTTCCACC 319991 ||||| || ||||| Sbjct 100989 AGAATCTTGCCACC 101002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057812506742240