Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq837 104 5e-17 >seq837 Length=2853963 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 104339 CTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT 104398 || ||||| || || || || ||||| || || ||||| || || || || | || ||| Sbjct 1825312 CTGAGCCTCAGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTT 1825253 Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || |||||||||||||| ||||||||||| | | ||| ||||||||||| || || Sbjct 1825252 CTGCCATCTTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATCAGGAGGAATACCC 1825193 Query 104459 TCTTTATCCTGA 104470 || || |||||| Sbjct 1825192 TCCTTGTCCTGA 1825181 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 |||| ||||| ||||| || || || | |||||||| ||| ||||| ||||| |||| Sbjct 1825059 CCTGTATCTTAGCTTTCACGTTGTCAATTGTATCGCTGCTTTCCACCTCAAGTGTGATAG 1825000 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || || ||||| ||||| |||||||| Sbjct 1824999 TCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 1824966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385890056384