Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq82 86.0 2e-11 >seq82 Length=1542430 Score = 86.0 bits (94), Expect = 2e-11 Identities = 310/476 (65%), Gaps = 17/476 (4%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 || || || || ||| | | |||||| || ||||||||| ||| |||| || Sbjct 614345 TTTGCAGAGCGGCTTGTCGGCTTTGCTTGCGTAGAAGGCATTCACTTCAGTGGAAGCTTC 614286 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 || | || || ||||| || ||| | | | ||||| || || || || |||||| Sbjct 614285 TGCTCCATTTTCTGGCTCAAGAAAAGGGGTCTCATGCCTGGACTGACATTCAGCAATGAG 614226 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT 22662 | || ||| |||||||||| | ||||| || ||||| || | || ||| | | | Sbjct 614225 CTGATCAGCAGAGATGAGGGCTTGCATACAGACTTTGCCTGCCTACTGTATAGCCAGC-- 614168 Query 22663 ATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTT 22722 ||| || | | ||| | || | |||| ||| || || | ||||| |||||| Sbjct 614167 -TCAGAAATCAGTTGCCACAAGAGAGAGTACACACCATTGTTGCAGAAGCAGTAGAACTT 614109 Query 22723 GAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTA----TCAATGCCGA 22778 || | | || ||| ||||| | |||| || || ||||| | ||||| || Sbjct 614108 GAGCATGAGTTCTGTTGTGAGGCTCT--CAGT--GTATCGCTGGTAGGCATGAATGCAGA 614053 Query 22779 ATCAATGA-GT-ACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTA 22835 || ||| || ||| ||||| || ||||| || ||||| | | | |||| || | Sbjct 614052 -TC--TGATGTCACAGTATATCAACTTTGTGGCTGATCGGTTGCTGGTAGCACTTGGGTG 613996 Query 22836 TGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGG 22895 || |||| || || | ||||| ||||| |||||||| | || || || |||| Sbjct 613995 TGAGAAGCTGTACCACACAGCAAATCCTTTTGACTGGATGGAGATGATATCCCTCCAAGG 613936 Query 22896 AAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 |||||||||||||| || |||| ||||| || || || ||||| |||| Sbjct 613935 CAAGACCAATTTCTTTGAGCGCCGAGTGGGTGACTATCAGCGCGCTGGTGTCATGG 613880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303339439063136