Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq847 95.1 1e-14 seq238 87.8 2e-12 seq845 86.0 6e-12 >seq847 Length=8161804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||| || || | || | || ||||||||||| |||||||| ||| Sbjct 3587123 GCCTCCTCGCAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGC 3587182 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||||||| |||||||| || |||| | |||||||||||| ||||| Sbjct 3587183 CAATGTTCGGCCGTCCTCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGAGG 3587242 Query 131127 GATTCCT 131133 ||| ||| Sbjct 3587243 GATGCCT 3587249 >seq238 Length=1739233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||||||| ||||| || || | || |||||||| || || |||||||| | Sbjct 1332719 CCACCGCGCAAACGAAGCACCAAGTGCAGTGTTGACTCCTTCTGGATATTGTAATCTGCC 1332778 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| |||||||| || || |||| | |||||||||||| || || Sbjct 1332779 AGAGTCCTGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 1332838 Query 131128 ATTCCT 131133 || ||| Sbjct 1332839 ATACCT 1332844 >seq845 Length=2227659 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| | ||| | ||| | ||| |||||||| || ||||| || || Sbjct 1814185 GCCTCCGCGCAGACGTAACACCAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGC 1814244 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| |||||||| || || |||| | |||||||||||| ||||| Sbjct 1814245 AAGTGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCGGGAGG 1814304 Query 131127 GATTCCT 131133 ||| ||| Sbjct 1814305 GATACCT 1814311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007796664320