Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq82 104 3e-17 >seq82 Length=1542430 Score = 104 bits (114), Expect = 3e-17 Identities = 258/380 (68%), Gaps = 19/380 (5%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| ||||| | || ||||| ||||||| ||| |||||| |||| || ||| Sbjct 614019 ATCAGCCACAAAGTTGATATACTGTGACATCAGATCTGCATTCATGCCTACCAGCGATAC 614078 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 | ||||| || |||| || | ||| | | | || |||||| ||| | | | | Sbjct 614079 ACTGAGAGCCTCACAACAGAACTCATGCTCAAGTTCTACTGCTTCTG-CAACAATGGTGT 614137 Query 93046 -TACTCTACTATT-TGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099 |||||| || || ||| || ||| || | || |||| || ||| ||||| Sbjct 614138 GTACTCT-CTCTTGTGGCAACTGATTTCTGAGCTGGCTA----TACAGTAGGCAGGCAAA 614192 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 ||| ||||| || || || |||| || | |||| ||||||||||||||| | || || | Sbjct 614193 GTCTGTATGCAAGCCCTCATCTC-TGCTGATCAGCTCATTGCTGAATGTCAGTCCAGGCA 614251 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCT 93217 || || | |||||||||||| || | || |||| || || ||| || || ||| Sbjct 614252 TGAGACCCCTTTTCTTGAGCCAGAA-AATGGAGCAGAAGCTTCCACTGAAGTGAATGCCT 614310 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || ||| ||||| | |||| || || |||||| | || |||||| ||||| Sbjct 614311 TCTACGCAAGCAAAGCCGACAAGCCGCTCTGCAAAACT---GGTGCTACTGCCTATCCAC 614367 Query 93278 TTTAAAGCCCAATCGGCTTT 93297 ||||||||| || ||||| Sbjct 614368 CGTAAAGCCCAGTCAGCTTT 614387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854897275520