Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq847 152 1e-31 seq833 152 1e-31 seq82 87.8 4e-12 >seq847 Length=8161804 Score = 152 bits (168), Expect = 1e-31 Identities = 288/418 (69%), Gaps = 7/418 (2%) Strand=Plus/Plus Query 279948 GGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAG 280007 ||||||||||| | || ||| | | || ||||| |||||||| ||||| || Sbjct 6244400 GGCAACCTGTCAGAGTTTGTGAAGAGGGTGCCAGAGGCTCAGGCCTACTACAACCTGGAG 6244459 Query 280008 GACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067 | ||| || |||||| | ||||| || || || || ||||||||||||| | ||| Sbjct 6244460 GCAGCCTCCACCAAGTTTGCCTTCCCAGAACCCGGCTTCCTGGAGGGCATCAAGACCAAG 6244519 Query 280068 GATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCC---AAC 280124 || || || | ||| | ||||| || | || || || | || || Sbjct 6244520 GACAAGGCCATTCTCAAGATGGCCCGCGTCGGGTTCACCTACCCAAACACCACCCGCAAG 6244579 Query 280125 ATC-TTCAGCAGTGTCAAC-TCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGAC 280182 ||| || || | |||| | |||| | | | | ||||| || | | ||||||||| Sbjct 6244580 ATCATTGAGGGG-GTCAGCATCGCCG-TCACCCTCAACTCGCGTGTGGCTGTCATTGGTG 6244637 Query 280183 CCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTG 280242 |||||||||| || ||||| ||| | ||||| | || ||||| ||| || ||| || Sbjct 6244638 CCAATGGTGCTGGCAAGTCCACCATGATCAAGCTGCTCACTGGTGAGCTGGAGACCAATG 6244697 Query 280243 AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 |||| | || |||||||| || || |||| |||| |||||||| ||||||||||||| Sbjct 6244698 AGGGCACTGTCTGGAAGCACCCAAATCTGCGTGTGGCCTACGTCGCCCAGCACGCTTTCC 6244757 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 ||||||| ||| | ||| |||||| ||| || || | ||||| |||||| || || Sbjct 6244758 ACCACATTGAGCAGCACTTGGACAAGACCCCCAATGACTACATCGCGTGGCGGTACGC 6244815 >seq833 Length=348647 Score = 152 bits (168), Expect = 1e-31 Identities = 288/418 (69%), Gaps = 7/418 (2%) Strand=Plus/Minus Query 279948 GGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAG 280007 ||||||||||| | || ||| | | || ||||| |||||||| ||||| || Sbjct 99700 GGCAACCTGTCAGAGTTTGTGAAGAGGGTGCCAGAGGCTCAGGCCTACTACAACCTGGAG 99641 Query 280008 GACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067 | ||| || |||||| | ||||| || || || || ||||||||||||| | ||| Sbjct 99640 GCAGCCTCCACCAAGTTTGCCTTCCCAGAACCCGGCTTCCTGGAGGGCATCAAGACCAAG 99581 Query 280068 GATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCC---AAC 280124 || || || | ||| | ||||| || | || || || | || || Sbjct 99580 GACAAGGCCATTCTCAAGATGGCCCGCGTCGGGTTCACCTACCCAAACACCACCCGCAAG 99521 Query 280125 ATC-TTCAGCAGTGTCAAC-TCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGAC 280182 ||| || || | |||| | |||| | | | | ||||| || | | ||||||||| Sbjct 99520 ATCATTGAGGGG-GTCAGCATCGCCG-TCACCCTCAACTCGCGTGTGGCTGTCATTGGTG 99463 Query 280183 CCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTG 280242 |||||||||| || ||||| ||| | ||||| | || ||||| ||| || ||| || Sbjct 99462 CCAATGGTGCTGGCAAGTCCACCATGATCAAGCTGCTCACTGGTGAGCTGGAGACCAATG 99403 Query 280243 AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 |||| | || |||||||| || || |||| |||| |||||||| ||||||||||||| Sbjct 99402 AGGGCACTGTCTGGAAGCACCCAAATCTGCGTGTGGCCTACGTCGCCCAGCACGCTTTCC 99343 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 ||||||| ||| | ||| |||||| ||| || || | ||||| |||||| || || Sbjct 99342 ACCACATTGAGCAGCACTTGGACAAGACCCCCAATGACTACATCGCGTGGCGGTACGC 99285 Score = 111 bits (122), Expect = 3e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 |||| | || ||||| ||| ||| ||||| ||||| || || || ||||| ||||||| Sbjct 97940 TGGGCATTGAGCCCGAATTTGGAACCCACTCCCGCATGCGTGGCCTGTCTGGTGGCCAGA 97881 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 |||||||| ||||||| | || || ||||| | |||| ||| | | || || || | Sbjct 97880 AGGTCAAAGTTGTCATTGCTGCTGCCATGTGGAACAACCCCCACATCCTGGTGCTGGATG 97821 Query 280798 AGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGC 280846 |||| |||||||| |||||| | ||| | ||||||| ||| || ||| Sbjct 97820 AGCCCACCAACTACCTGGACAGGGAGTCCTTGGGCGCCCTGGCTGGTGC 97772 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 ||||| ||||||||||| ||| ||||||| || | ||||||||||| || || ||| Sbjct 101002 GGTGGCAAGATTCTGCTCAACAACGCCCGCCTTCACCTGAAGCGTGGCAAGCGCTACGGT 100943 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || ||| ||||| || || || ||| ||| || ||| | ||||||| || || ||| Sbjct 100942 CTGTGCGGCCCCAACGGTGCTGGCAAGTCCACCCTCATGAGGTCCATTGCTAATGGGCAG 100883 Query 279504 CTGGAAGGATTTCC 279517 |||| || || || Sbjct 100882 TTGGAGGGCTTCCC 100869 >seq82 Length=1542430 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585 ||| ||||| | || ||||| ||| || ||||| || |||||||| | |||||| | Sbjct 613881 CATGACACCAGCGCGCTGATAGTCACCCACTCGGCGCTCAAAGAAATTGGTCTTGCCTTG 613940 Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645 || || || | |||||| |||| || || |||| | | |||| |||| | || Sbjct 613941 GAGGGATATCATCTCCATCCAGTCAAAAGGATTTGCTGTGTGGTACAGCTTCTCACACCC 614000 Query 251646 AAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTT 251705 ||||||||| | | || || |||||||| | | ||||||| |||||| || | || Sbjct 614001 AAGTGCTACCAGCAACCGATCAGCCACAAAGTTGATATACTGTGACATCAGATCTGCATT 614060 Query 251706 CATGCC 251711 |||||| Sbjct 614061 CATGCC 614066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825632553168