Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq847 152 9e-32 seq833 152 9e-32 seq845 98.7 2e-15 seq840 84.2 4e-11 seq44 84.2 4e-11 >seq847 Length=8161804 Score = 152 bits (168), Expect = 9e-32 Identities = 276/394 (70%), Gaps = 11/394 (3%) Strand=Plus/Minus Query 224956 CTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAG 225015 |||| ||||| || ||||| ||||||||| |||||| | ||||||||| |||||| Sbjct 6244834 CTCCCTGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAA 6244775 Query 225016 GTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATG 225075 ||| | |||||| ||||||||||| |||||||| ||||| |||| |||| || || || Sbjct 6244774 GTGCTGCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTG 6244715 Query 225076 CTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGT 225135 |||||| |||| |||| | | | | ||| || ||||| | |||||| | || | Sbjct 6244714 CTTCCAGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGA 6244655 Query 225136 CTTGCCCGCACCATTGGGGCCAATCAC-GCCA-ATCCGGGATGACATTGCAACCTGCGA- 225192 |||||| |||||||||| ||||| || |||| | || | ||| || | |||| Sbjct 6244654 CTTGCCAGCACCATTGGCACCAATGACAGCCACACGCGAGTTGAGGGTG---ACGGCGAT 6244598 Query 225193 GTTCACGTTGCTGAA-GATCT--CAGGGCCAGTTT-GGTAAGCAAAGGCCACGCCACGCA 225248 | | || || || ||||| | || |||| |||| | || | |||| || Sbjct 6244597 GCTGAC-CCCCTCAATGATCTTGCGGGTGGTGTTTGGGTAGGTGAACCCGACGCGGGCCA 6244539 Query 225249 GCTTCATGATGGCACGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACT 225308 ||| | ||||| |||||||| | || ||||||||||| ||||| || ||||| Sbjct 6244538 TCTTGAGAATGGCCTTGTCCTTGGTCTTGATGCCCTCCAGGAAGCCGGGTTCTGGGAAGG 6244479 Query 225309 CCCACTTGGTCACCGCGTCCTTCAGGTCGTAGTA 225342 | ||||||| || ||| ||||| |||||| Sbjct 6244478 CAAACTTGGTGGAGGCTGCCTCCAGGTTGTAGTA 6244445 Score = 131 bits (144), Expect = 3e-25 Identities = 210/298 (70%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 173534 TATTTGTATGTTGATGACGTGGCAGAGGCTTACATTACTATTTTGCTCAAGGGCAATGTC 173593 || |||||||| || || || || || ||||||||||| || | | |||||||| | Sbjct 5934747 TACTTGTATGTGGAGGATGTAGCGGAAGCTTACATTACCGTTCTTCACAAGGGCAGCATT 5934688 Query 173594 GGGGAAACGTACAACATTGGCACACAGAAGGAGCGCAGTGTTGTAGATGTTGCGCATGAT 173653 || ||||| || ||||||||||||||| ||||||| | || ||| || | || Sbjct 5934687 GGAGAAACATATAACATTGGCACACAGCAGGAGCGTACAGTAACCAGTGTAGCTCGAGAC 5934628 Query 173654 ATTTGCAAGATTTTCAACAGGGACTCCGATACTGCCAT--TTGGC-ATGTGAAAGATCGT 173710 || | || ||||||| || || || || ||| ||| | |||| || |||||| Sbjct 5934627 CTTGGGAAATTTTTCAA---GGTTTCAGA---TGACATGATTGTCAATGTAAAGGATCGT 5934574 Query 173711 GCATTCAATGACCGTCGGTATTTTATTTCCGACAAAAAGCTTCTCGACCTCGGCTGGCAG 173770 || ||||||||||| ||||| || || | ||||| |||||| | || |||||| || Sbjct 5934573 GCCTTCAATGACCGGCGGTACTTCATCTGTGACAAGAAGCTTGCCCTGCTTGGCTGGAAG 5934514 Query 173771 GAGAAAACCACATGGGAGGATGGCCTTAAGCAGACTGTGGGTTGGTACCTTCAGCATG 173828 ||||| ||| |||||||| ||| | | |||| | | |||||| | |||||| Sbjct 5934513 GAGAAGCACACCTGGGAGGAGGGCTTGCAAAAGACCATAGATTGGTATTTGAAGCATG 5934456 Score = 122 bits (134), Expect = 2e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 173318 CTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCA 173377 || ||||| || |||||||| |||| || || || || || || |||||||| ||| Sbjct 5935182 CTAGAGCCTACCAACCCATACTCAGCTGCTAAAGCAGGCGCAGAGTTGATGGCAAAAGCA 5935123 Query 173378 TATCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCG 173437 || ||||||| |||||||| ||||||||| | || || ||||||||||||||||| || Sbjct 5935122 TACTACACATCATACAAGCTGCCAGTCATCATTACACGTGGCAACAATGTGTATGGTCCA 5935063 Query 173438 CATCAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCA 173482 |||| || ||||| |||||||||| || ||| | || ||| Sbjct 5935062 AGACAGTATCCAGAAAAGCTGATCCCAAAGTTCATTTTGCGAGCA 5935018 Score = 120 bits (132), Expect = 6e-22 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 173321 GAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATAT 173380 ||||| || |||||||| |||| ||||||||||| || || ||||||||| || || Sbjct 4881048 GAGCCCACCAACCCATACTCAGCTGCCAAGGCTGGAGCAGAGATGATGGCAAAGGCTTAC 4881107 Query 173381 CACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCAT 173440 |||| || |||||||| || ||||| | || || |||||||||||||| ||||| || Sbjct 4881108 TACACCTCATACAAGCTCCCCATCATCATCACCCGAGGCAACAATGTGTACGGCCCAAAT 4881167 Query 173441 CAGTTCCCCGAAAAAATGA-TCCCAA 173465 ||||| || || || |||| |||||| Sbjct 4881168 CAGTTTCCAGAGAAGATGATTCCCAA 4881193 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 173128 GCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTA 173187 |||||| ||||| |||||||| || |||||| || ||||| |||||||||||| || Sbjct 4880528 GCAGACACATGTTGACAACTCATTTGGTAACAGCCTAGCATTCACCATGAACAACACATA 4880587 Query 173188 CGGGACCCACGTTCTCCTGGAATGCGCG-AGGCTCTATGGCGGTGTCCAGCGGTTCATCA 173246 || || || || ||||| | | ||| | ||| | | | || |||| |||||| Sbjct 4880588 TGGCACACATGTGCTCCTAG-AGGCGTGCAGGATGTCCACCAACATCAAGCGAGTCATCA 4880646 Query 173247 ATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGG 173286 |||| || || ||||||||||| || ||||||||||| Sbjct 4880647 ATGTCAGCACAGATGAAGTATACGGTGAAAGCAGTCTGGG 4880686 >seq833 Length=348647 Score = 152 bits (168), Expect = 9e-32 Identities = 276/394 (70%), Gaps = 11/394 (3%) Strand=Plus/Plus Query 224956 CTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAG 225015 |||| ||||| || ||||| ||||||||| |||||| | ||||||||| |||||| Sbjct 99266 CTCCCTGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAA 99325 Query 225016 GTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATG 225075 ||| | |||||| ||||||||||| |||||||| ||||| |||| |||| || || || Sbjct 99326 GTGCTGCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTG 99385 Query 225076 CTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGT 225135 |||||| |||| |||| | | | | ||| || ||||| | |||||| | || | Sbjct 99386 CTTCCAGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGA 99445 Query 225136 CTTGCCCGCACCATTGGGGCCAATCAC-GCCA-ATCCGGGATGACATTGCAACCTGCGA- 225192 |||||| |||||||||| ||||| || |||| | || | ||| || | |||| Sbjct 99446 CTTGCCAGCACCATTGGCACCAATGACAGCCACACGCGAGTTGAGGGTG---ACGGCGAT 99502 Query 225193 GTTCACGTTGCTGAA-GATCT--CAGGGCCAGTTT-GGTAAGCAAAGGCCACGCCACGCA 225248 | | || || || ||||| | || |||| |||| | || | |||| || Sbjct 99503 GCTGAC-CCCCTCAATGATCTTGCGGGTGGTGTTTGGGTAGGTGAACCCGACGCGGGCCA 99561 Query 225249 GCTTCATGATGGCACGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACT 225308 ||| | ||||| |||||||| | || ||||||||||| ||||| || ||||| Sbjct 99562 TCTTGAGAATGGCCTTGTCCTTGGTCTTGATGCCCTCCAGGAAGCCGGGTTCTGGGAAGG 99621 Query 225309 CCCACTTGGTCACCGCGTCCTTCAGGTCGTAGTA 225342 | ||||||| || ||| ||||| |||||| Sbjct 99622 CAAACTTGGTGGAGGCTGCCTCCAGGTTGTAGTA 99655 Score = 89.7 bits (98), Expect = 9e-13 Identities = 122/165 (74%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 224499 GCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGG 224558 |||| ||||| ||||| | ||| ||| |||| || ||||||||||| | | | ||||| Sbjct 97784 GCGC-CCAAG-GACTCCCTGTCCAGGTAGTTGGTGGGCTCATCCAGCACCAGGATGTGGG 97841 Query 224559 GGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGC 224618 || | ||||| ||| ||| ||| || | || |||||||| || ||||| ||||| | Sbjct 97842 GGTTGTTCCACATGGCAGCAGCAATGACAACTTTGACCTTCTGGCCACCAGACAGGCCAC 97901 Query 224619 GGATCCGCGAGTGAGTCGTGAATTCGGGGTCAA-GACCA-ATCTT 224661 | || || ||||| || |||||||| |||| | ||| ||||| Sbjct 97902 GCATGCGGGAGTGGGTTCCAAATTCGGGCTCAATGCCCACATCTT 97946 Score = 89.7 bits (98), Expect = 9e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 225767 GACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGG--GGAAGC 225824 || || || ||||| || |||||||| || || || ||||| | | || |||||| Sbjct 100818 GAGGCATCGATGTCATGCTCCACGTATACAGTGCGCAGCTGGTC--CTTGGGTGGGAAGC 100875 Query 225825 CCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGAC 225884 |||||| ||| ||||| ||||| | | | ||||| |||||| || |||||||| | Sbjct 100876 CCTCCAACTGCCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCGTTGGGGC 100935 Query 225885 CGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCT 225944 || || ||||| | || || ||||| | || ||||| | | ||| || || |||| Sbjct 100936 CGCACAGACCGTAGCGCTTGCCACGCTTCAGGTGAAGGCGGGCGTTGTTGAGCAGAATCT 100995 Query 225945 TGCCACC 225951 ||||||| Sbjct 100996 TGCCACC 101002 >seq845 Length=2227659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||||||||| | |||||| || |||||||||| || || |||||| Sbjct 1814081 CCTTCTTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAGGACTCCACTTCC 1814140 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || || |||||||| || |||||||| Sbjct 1814141 AGGGTGATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1814184 >seq840 Length=3878309 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 ||||||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 2963133 TAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCAAGGGTTCGAGCCCC 2963188 >seq44 Length=41806 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 ||||||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 38830 TAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCAAGGGTTCGAGCCCC 38885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921612630802560