Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq847 96.9 3e-15 seq837 86.0 5e-12 >seq847 Length=8161804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| ||| || || || || ||||| ||| |||||| || |||||||| || ||| Sbjct 3587124 CCTCCTCGCAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCC 3587183 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| |||| || | ||||||||||||||| || || |||||||| || Sbjct 3587184 AATGTTCGGCCGTCCTCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTC 3587236 >seq837 Length=2853963 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33907 CTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT 33966 || |||| ||||||||| || | ||| ||||||||| |||||||||||||||| | Sbjct 1825312 CTGAGCCTCAGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTT 1825253 Query 33967 CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | ||| ||||| ||||| |||| |||||||||||| Sbjct 1825252 CTGCCATCTTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATC 1825206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058296360096