Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq847 113 1e-19 seq833 113 1e-19 >seq847 Length=8161804 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 333319 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 333378 |||| ||||| ||||| || ||||| ||| || | ||||| ||| |||| | || | Sbjct 6244829 TGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAAGTGCT 6244770 Query 333379 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 333438 ||| |||||||||||||| ||||| || ||||| || | ||||| |||||| ||||||| Sbjct 6244769 GCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTGCTTCC 6244710 Query 333439 AAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTC 333498 | ||| | || | ||| |||| | || ||||||| ||| || | ||| || | Sbjct 6244709 AGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGACTTGC 6244650 Query 333499 CCGCACCATT 333508 | |||||||| Sbjct 6244649 CAGCACCATT 6244640 >seq833 Length=348647 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 333319 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 333378 |||| ||||| ||||| || ||||| ||| || | ||||| ||| |||| | || | Sbjct 99271 TGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAAGTGCT 99330 Query 333379 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 333438 ||| |||||||||||||| ||||| || ||||| || | ||||| |||||| ||||||| Sbjct 99331 GCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTGCTTCC 99390 Query 333439 AAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTC 333498 | ||| | || | ||| |||| | || ||||||| ||| || | ||| || | Sbjct 99391 AGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGACTTGC 99450 Query 333499 CCGCACCATT 333508 | |||||||| Sbjct 99451 CAGCACCATT 99460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102868017208800