Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq847 84.2 2e-11 seq238 84.2 2e-11 >seq847 Length=8161804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || || |||| || || || ||||| |||||||| || || Sbjct 3587124 CCTCCTCGCAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCC 3587183 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || || |||||||||||| | || || ||||||||||| ||||| Sbjct 3587184 AATGTTCGGCCGTCCTCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGAGGG 3587243 Query 64337 ATTCCT 64342 || ||| Sbjct 3587244 ATGCCT 3587249 >seq238 Length=1739233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | |||||| | || | || || || || || || ||||||||||| Sbjct 1332719 CCACCGCGCAAACGAAGCACCAAGTGCAGTGTTGACTCCTTCTGGATATTGTAATCTGCC 1332778 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | |||| ||||||||||| || ||| | || || ||||||||||| || ||| Sbjct 1332779 AGAGTCCTGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 1332838 Query 64337 ATTCCT 64342 || ||| Sbjct 1332839 ATACCT 1332844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639503765120