Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq846 104 3e-17 >seq846 Length=7821234 Score = 104 bits (114), Expect = 3e-17 Identities = 199/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||| ||||| || | ||| || || | ||||||| ||| | ||| || Sbjct 3745271 CTGACGGTCAAAACGACCGGGTCTGAGCAGAGCTGCATCAAGGACGTCAGGCCTGTTGGT 3745212 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || | ||||| || || || | | || |||||||||||||| || | || || Sbjct 3745211 GGCTGCCAGGACAATGACACCAGTGTTGCCCTCAAAGCCATCCATCTCTGTAAGCAGCTG 3745152 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTA 12875 ||||||||||| || | |||||||| || || ||| || |||| | ||| | Sbjct 3745151 GTTGATGGTTTGCTCCCTCTCATCATT-GCCACCA-CCCATGCCAGCACCTCTTTGGCGA 3745094 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || || || ||||| || |||||||| ||||| || || || | |||| | || Sbjct 3745093 CCAACAGCATCAATCTCATCAATGAACACGATGCAGGGGGCTTTCTTCTTGGCAGCAGCA 3745034 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 |||| |||||||| || || || |||||||||||||| |||| Sbjct 3745033 AAGAGGCTGCGCACTCTGCGGGAGCCCACCCCCACAAACATCTCTTCAAA 3744984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500696823680