Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq847 107 5e-18 seq845 93.3 1e-13 seq238 93.3 1e-13 >seq847 Length=8161804 Score = 107 bits (118), Expect = 5e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| ||||||||||||| ||||||||| ||||| || | || || Sbjct 3587139 AGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCCAATGTTCGGCCGTCC 3587198 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 3587199 TCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGA 3587240 >seq845 Length=2227659 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || |||||||| |||| ||| |||||||| | || | ||||| ||| Sbjct 1814204 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGACCATCCTCC 1814263 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||||||| || ||||| |||||||||||||| ||| Sbjct 1814264 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCGGGA 1814302 >seq238 Length=1739233 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||| || |||| |||||| || || Sbjct 1332734 AGCACCAAGTGCAGTGTTGACTCCTTCTGGATATTGTAATCTGCCAGAGTCCTGCCGTCC 1332793 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || ||||||||||| || ||||| |||||||||||||| || Sbjct 1332794 TCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 1332834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908791016816