Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq846 89.7 4e-12 >seq846 Length=7821234 Score = 89.7 bits (98), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT----TGTCTTG 518163 ||||| ||| |||||||||| ||||| || || ||||| || || || Sbjct 3960108 ACATCGAAGGTGCCACCACCCAAGTCAAAGATGAGCACATTGCGCTCGCCGACTGACTCA 3960049 Query 518164 G--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || || ||||| ||||| || | ||||| || ||||| ||||| || || | || Sbjct 3960048 GACTTCTTGTCAAGTCCATAGGCGATGGCAGCTGCTGTTGGCTCATTGATGATACGCAGG 3959989 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 |||| |||||||||||| ||| ||||| || || ||||| | ||||| ||||| || Sbjct 3959988 ACATCAAGACCAGCAATGGCTCCAGCATCCTTTGTTGCTTGGCGCTGTGAGTCGTTGAAG 3959929 Query 518282 TATGCAGGAACAGT 518295 ||||| || || || Sbjct 3959928 TATGCTGGCACTGT 3959915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780780319446688