Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq846 116 5e-21 >seq846 Length=7821234 Score = 116 bits (128), Expect = 5e-21 Identities = 204/291 (70%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| ||||| ||||| || | || || || ||||||||| ||| | || || Sbjct 3745271 CTGACGGTCAAAACGACCGGGTCTGAGCAGAGCTGCATCAAGGACGTCAGGCCTGTTGGT 3745212 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 || || | ||||| | ||| || | | ||||| |||||||||||||| | ||||| Sbjct 3745211 GGCTGCCAGGACAATGACACCAGTGTTGCCCTCAAAGCCATCCATCTCTGTAAGCAGCTG 3745152 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 16058 ||| || ||||| |||| |||||||| || || ||| ||||||| | ||| Sbjct 3745151 GTTGATGGTTTGCTCCCTCTCATCATT-GCCACCA-CCCATGCCAGCACCTCTTTGGCGA 3745094 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTC 16117 || || |||||||||||||||||||| |||||||| || || ||| | || | | Sbjct 3745093 CCAACAGCATCAATCTCATCAATGAACACGATGCAGGGGGCTTTCTTCTTG-GCAGCAGC 3745035 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 |||||| || || | || |||||| || ||||||||||| |||| Sbjct 3745034 AAAGAGGCTGCGCACTCTGCGGGAGCCCACCCCCACAAACATCTCTTCAAA 3744984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735820130560