Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq82 96.9 4e-15 seq846 82.4 9e-11 >seq82 Length=1542430 Score = 96.9 bits (106), Expect = 4e-15 Identities = 303/458 (66%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 |||||||||||| | || |||||||| ||||| || | ||| || || | ||||| Sbjct 613899 ATAGTCACCCACTCGGCGCTCAAAGAAATTGGTCTTGCCTTGGAGGGATATCATCTCCAT 613958 Query 119267 AAAGTCAAAAGGATTTTTGGAGT--TCCAGATTGGTGGTTGAC---CAACTTGTTTCAGA 119321 |||||||||||||| | || | ||| || | || ||| | | ||| Sbjct 613959 CCAGTCAAAAGGATTTGCTGTGTGGTACAGCTTC-----TCACACCCAAGTGCTACCAGC 614013 Query 119322 AGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA 119381 | ||||| | ||| | | |||||| | |||||| || | |||||| |||| || Sbjct 614014 AACCGATCAGCCACAAAGTTGATATACTGTGACATCAGATCTGCATTCATGCCTACCAGC 614073 Query 119382 T-TACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGAT 119440 ||||| | ||||| || ||| | | ||| | || || |||||| || || Sbjct 614074 GATACACTG-AGAGCCTCACAACAGAACTCATGCTCAAGTTCTACTGCTTCTGCAACAAT 614132 Query 119441 GGAGTGAATAGTTTCTGTCGATGGTT--TG-TTTCTCAAGAGTTTAAACAACTCTACGGC 119497 || ||| || | ||| | | ||| || ||||| | | || ||| ||| Sbjct 614133 GGTGTG--TACTCTCTCTTG-TGGCAACTGATTTCTGAGCTGGCTATACAGTAGGCAGGC 614189 Query 119498 AAATTCTTGATG-AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAG 119556 ||| ||| ||| ||||||| |||| | ||| |||||||| ||||| ||||||| Sbjct 614190 AAAGTCTGTATGCAAGCCCT-CATCTCTGCTGATCAGCTCATTGCTGAATGTCAGTCCAG 614248 Query 119557 GCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGC 119616 ||||||| || |||||||| ||||| || |||| || || |||||| ||| |||| Sbjct 614249 GCATGAGACCCCTTTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCACTGAAGTGAATGC 614308 Query 119617 CCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAA 119654 | || || || || || ||| || ||||| |||||| Sbjct 614309 CTTCTACGCAAGCAAAGCCGACAAGCCGCTCTGCAAAA 614346 >seq846 Length=7821234 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/223 (69%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || ||| || |||||||| || | ||| ||||| ||||||| | || | ||| || Sbjct 3745271 CTGACGGTCAAAACGACCGGGTCTGAGCAGAGCTGCATCAAGGACGTCAGGCCTGTTGGT 3745212 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 || || | ||| | | ||||| | || || || ||||| ||||| || ||||| Sbjct 3745211 GGCTGCCAGGACAATGACACCAGTGTTGCCCTCAAAGCCATCCATCTCTGTAAGCAGCTG 3745152 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCTTCTT- 11675 |||||| || || || | |||||| ||| |||||| |||| | | | |||| Sbjct 3745151 GTTGATGGTTTGCTCCCTCTCATCATTG------CCACCACCCATGCC-AGCACCTCTTT 3745099 Query 11676 ----ACCGACAGCGTCAATCTCATCGATGAATACGATACACGG 11714 ||| ||||| ||||||||||| ||||| ||||| || || Sbjct 3745098 GGCGACCAACAGCATCAATCTCATCAATGAACACGATGCAGGG 3745056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969756854400