Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq846 104 3e-17 >seq846 Length=7821234 Score = 104 bits (114), Expect = 3e-17 Identities = 202/294 (69%), Gaps = 12/294 (4%) Strand=Plus/Minus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||| ||||| ||||| || | || || || ||||||||| ||| | || || Sbjct 3745271 CTGACGGTCAAAACGACCGGGTCTGAGCAGAGCTGCATCAAGGACGTCAGGCCTGTTGGT 3745212 Query 9248 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307 || || | ||||| | ||| || | ||||| |||||||||||||| | || || Sbjct 3745211 GGCTGCCAGGACAATGACACCAGTGTTGCCCTCAAAGCCATCCATCTCTGTAAGCAGCTG 3745152 Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 9365 ||| || ||||| |||| |||||||| || || ||| ||||||| | ||| Sbjct 3745151 GTTGATGGTTTGCTCCCTCTCATCATT-GCCACCA-CCCATGCCAGCACCTCTTTGGCGA 3745094 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGAT 9421 || || |||||||||||||||||||| || || || || || | || || | | Sbjct 3745093 CCAACAGCATCAATCTCATCAATGAACACGATGCAGGGGGCTTTCTTCTTGGCAGCAG-- 3745036 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||||| ||| || || || |||||| || ||||||||||| |||| Sbjct 3745035 --CAAAGAGGCTGCGCACTCTGCGGGAGCCCACCCCCACAAACATCTCTTCAAA 3744984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974546203520