Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq847 102 2e-16 >seq847 Length=8161804 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||||||||| ||||| || ||||| ||||| | |||| || || || Sbjct 3587141 AACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCCAATGTTCGGCCGTCCTC 3587200 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| || || |||||||| || || ||||| ||||| |||||| Sbjct 3587201 TAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGAGGGATGCCT 3587249 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633 |||||||| || ||||||| | | ||||| ||| || ||||||| ||| ||| || Sbjct 1842026 AGAGCCAGGGACCTTTTCTATGGCCTCTGGGTGAACGACCTGTTCATGAGGAGGGTGGAA 1841967 Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGAT 160687 | ||||| || ||| ||| |||||||||||||| |||||||| || | |||| Sbjct 1841966 GCCAATGCAGAGTGGTCCCTGTTCTGTCCCAATGAGGCGCCTGGGCTGGCTGAT 1841913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109469545482416