Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq846 113 4e-19 seq238 107 2e-17 seq838 89.7 4e-12 >seq846 Length=7821234 Score = 113 bits (124), Expect = 4e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 550364 ACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATA 550422 ||||||| || || |||| |||| | || | | ||||| | || || |||||||| Sbjct 3959870 ACAGCCAC-GCAGTTCTTGGGCAAGGACGTCAAGAGGGCAGTCGTGACAGTGCCAGCATA 3959928 Query 550423 TTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGT 550482 || || |||||||| || ||||| || || ||||||||| |||||||| ||| |||| Sbjct 3959929 CTTCAACGACTCACAGCGCCAAGCAACAAAGGATGCTGGAGCCATTGCTGGTCTTGATGT 3959988 Query 550483 TCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAA 550542 || ||||| |||||||| || || || ||||| | || ||||||||||| || | Sbjct 3959989 CCTGCGTATCATCAATGAGCCAACAGCAGCTGCCATCGCCTATGGACTTGACAAGAAGTC 3960048 Query 550543 TGA-TCAA-----GAACTTAATGTACTCATCTTTGA 550572 ||| ||| || | ||||| ||||||||||| Sbjct 3960049 TGAGTCAGTCGGCGAGCGCAATGTGCTCATCTTTGA 3960084 >seq238 Length=1739233 Score = 107 bits (118), Expect = 2e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | || || |||||||| || ||||||||||| |||||||| || || |||||| Sbjct 629230 GCAGTGGTGACCGTGCCAGCATACTTCAATGACTCACAGCGTCAAGCCACAAAGGATGCT 629289 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || |||||||| || |||| || ||||| || ||||| || ||||||||| Sbjct 629290 GGCCGCATTGCTGGCCTGGATGTGCTGCGTATCATTAATGAGCCCACTGCTGCT 629343 >seq838 Length=3057357 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || || || ||||||||||| || |||||||| || |||||| Sbjct 1311237 GCAGTCATCACAGTGCCTGCCTACTTCAATGACTCACAGCGGCAAGCTACCAAGGATGCT 1311296 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || || ||||| || || |||| | || || |||||||| || ||||| || || || Sbjct 1311297 GGCCGGATTGCGGGTCTAGATGTGCAGCGGATCATCAATGAGCCCACTGCAGCAGCCCT 1311355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029251153935520