Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq846 111 1e-18 seq837 86.0 4e-11 >seq846 Length=7821234 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | || || |||||||| || || || || || || |||||||| || ||||| Sbjct 3959906 GCAGTCGTGACAGTGCCAGCATACTTCAACGACTCACAGCGCCAAGCAACAAAGGATGCT 3959965 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| ||||| |||||| |||| | ||||| || ||||| ||||||||||| || | Sbjct 3959966 GGAGCCATTGCTGGTCTTGATGTCCTGCGTATCATCAATGAGCCAACAGCAGCTGCCATC 3960025 Query 474857 GCTTATGGTCTTGATAAGAATTCTGA 474882 || ||||| ||||| ||||| ||||| Sbjct 3960026 GCCTATGGACTTGACAAGAAGTCTGA 3960051 >seq837 Length=2853963 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || || |||||| |||||| ||||| || ||||||||||| | || || Sbjct 1825270 TTGTAATCTGCCAGCGTTCTGCCATCTTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGC 1825211 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 |||||||||||||| || |||||||| ||| Sbjct 1825210 TGATCAGGAGGAATACCCTCCTTGTCCTGA 1825181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268142825165504