Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq846 87.8 2e-12 >seq846 Length=7821234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||| ||||||||||| || ||||| || || || ||| ||||||| | | Sbjct 3744984 TTTGAAGAGATGTTTGTGGGGGTGGGCTCCCGCAGAGTGCGCAGCCTCTTTG----CTGC 3745039 Query 175456 CGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 || || | || || || || || |||||||||||||||||||| || || || Sbjct 3745040 TGCCAAGAAGAAAGCCCCCTGCATCGTGTTCATTGATGAGATTGATGCTGTTGGTCGCCA 3745099 Query 175512 ACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | | | ||||| ||| || |||| ||| ||||| || ||||| || || || || Sbjct 3745100 AAGAGGTGCTGGCATGGG-TGGTGGCAA-TGATGAGAGGGAGCAAACCATCAACCAGCTG 3745157 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || ||||||||||||||||| | ||||| | | || | || ||||| || Sbjct 3745158 CTTACAGAGATGGATGGCTTTGAGGGCAACACTGGTGTCATTGTCCTGGCAGCCACCAAC 3745217 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | || ||||||||| || || || | || ||||||||||| || Sbjct 3745218 AGGCCTGACGTCCTTGATGCAGCTCTGCTCAGACCCGGTCGTTTTGACCG 3745267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563276362240