Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq846 107 3e-18 seq837 102 1e-16 seq845 93.3 6e-14 seq838 93.3 6e-14 seq847 87.8 2e-12 >seq846 Length=7821234 Score = 107 bits (118), Expect = 3e-18 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 198732 CCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT----AAGAAGCGTGGTGGAAC 198787 || || ||| | ||||||||||||||||| ||||||||| || || ||| ||| | Sbjct 3745056 CCCTGCATCGTGTTCATTGATGAGATTGATGCTGTTGGTCGCCAAAGAG-GTGCTGGCAT 3745114 Query 198788 TACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGA 198847 | ||| ||||||||| | ||||| || || |||||||| || || |||||||| Sbjct 3745115 GGGTGG---TGGCAATGATGAGAGGGAGCAAACCATCAACCAGCTGCTTACAGAGATGGA 3745171 Query 198848 TGGTTTTGACAATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCT 198907 ||| ||||| | |||||| || | || | || || || || ||| ||| |||| Sbjct 3745172 TGGCTTTGAGGGCAACACTGGTGTCATTGTCCTGGCAGCCACCAACAGGCCTGACGTCCT 3745231 Query 198908 AGATGATGCACTGCTTCGTCCCGGTCGATTCGACCGTAAG 198947 |||| || ||||| | |||||||| || |||||| || Sbjct 3745232 TGATGCAGCTCTGCTCAGACCCGGTCGTTTTGACCGTCAG 3745271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 198738 ATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTACTACACCT 198797 ||||||||||| || ||||| ||||| || || | | || ||||| || | Sbjct 5469378 ATCATCTTCATAGACGAGATCGACGCAGTGGGCAGAATACGAGGTGGGGCT------CAG 5469431 Query 198798 GGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGAC 198857 || |||||||||||||| || || | ||||| | || | || |||||||| |||| Sbjct 5469432 GGCAATGATGAGCGTGACCAAACCCTCAACCAAATGCTATCCGAAATGGATGGCTTTGGA 5469491 Query 198858 AATGAGACT-GGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGC 198916 ||| || | || || | ||||| ||||| ||||| ||| ||||| | || || || Sbjct 5469492 GATG-GAGTGGGGGTCATTGTGATGGCTGCCACAAACAGGGTTGATGTGCTGGACCCGGC 5469550 Query 198917 ACTGCTTCGTCCCGGTCGATTCGACCGTAAGATTCAAGTGTCCCTTCCA 198965 |||| | | || || |||| ||||| | || |||||| || | ||| Sbjct 5469551 ACTGATCAGGCCTGGCAGATTTGACCGGATCATCCAAGTGGCCTTACCA 5469599 >seq837 Length=2853963 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 171951 TCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCT 172010 ||| || ||||| || ||||| || |||||||| || | ||||||||||| ||||| || Sbjct 1825181 TCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGCGCTTGATTTTTGCTGGCAAACAACT 1825240 Query 172011 TGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGT 172070 |||||||| | || || || ||||||||| | || |||||||| || | ||||| || Sbjct 1825241 AGAAGATGGCAGAACGCTGGCAGATTACAACATACAGAAGGAGTCCACATTGCACCTGGT 1825300 Query 172071 TCTAAGGCT 172079 || ||||| Sbjct 1825301 GCTGAGGCT 1825309 >seq845 Length=2227659 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || ||||| || || |||||||| || || ||||| ||| Sbjct 1814184 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATCACCCTGGAAGTGGAGTCCTCA 1814125 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || || |||| ||||||||||||| || ||||| Sbjct 1814124 GACACCATTGACAATGTCAAGTCCAAGATTCAAGACAAAGAAGG 1814081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| || || ||||| ||||| || ||||| |||||||| || ||||| || ||||| || Sbjct 1814311 AGGTATCCCTCCCGACCAGCAGCGTCTTATCTTTGCTGGAAAGCAGCTGGAGGATGGTCG 1814252 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || ||||| || ||| | || ||||||||||| || || || || || | || || Sbjct 1814251 CACACTTGCTGACTATAACATCCAGAAGGAGTCTACCCTTCATCTGGTGTTACGTCTGCG 1814192 Query 172083 GGGTGG 172088 || || Sbjct 1814191 CGGAGG 1814186 >seq838 Length=3057357 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 |||||||| |||||||||||||| ||||| ||||| || | || || || ||||| Sbjct 2110245 TGTGTTGGCGTATGGCAAAATGACCGTGTGGAGATCATTGCAAACGATATGGGCAACCGC 2110304 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || ||||| ||||||| ||| ||||| | || || || |||| || |||||||| Sbjct 2110305 ACTACCCCATCATACGTTGGCTTCACAGACAGCGAGCGACTTATTGGGGACGCCGCAAAG 2110364 Query 195452 AATCAG 195457 || ||| Sbjct 2110365 AACCAG 2110370 >seq847 Length=8161804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| || || || ||||| || ||||| ||||| || || || || || || || || Sbjct 3587249 AGGCATCCCTCCTGACCAGCAGCGTCTTATCTTTGCCGGCAAGCAACTAGAGGACGGCCG 3587190 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || | || || |||||| | ||||||||||| ||||| ||||||||||| Sbjct 3587189 AACATTGGCCGACTACAACATCCAAAAGGAGTCCACTCTTCACCTTGTTCT 3587139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657855426658560