Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq845 84.2 4e-11 seq837 84.2 4e-11 seq238 84.2 4e-11 >seq845 Length=2227659 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTC 82765 ||||| || ||||||||||| | || ||||| ||||| || || | ||| || ||||| Sbjct 1814081 CCTTCTTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTC-TGAGGACTCCACTTC 1814139 Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| |||| |||||| ||||| |||||||| Sbjct 1814140 CAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1814184 >seq837 Length=2853963 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||||| || || || |||||||| || ||||| | || |||| || || Sbjct 1825304 CAGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTTCTGCCATC 1825245 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 |||||||||||| |||||||| || | | || ||||| ||||| || || ||||| || Sbjct 1825244 TTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATCAGGAGGAATACCCTCCTTGTC 1825185 Query 82718 TTGA 82721 ||| Sbjct 1825184 CTGA 1825181 >seq238 Length=1739233 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| || || |||||||| || || || ||||| ||||| ||||| | Sbjct 1332719 CCACCGCGCAAACGAAGCACCAAGTGCAGTGTTGACTCCTTCTGGATATTGTAATCTGCC 1332778 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | || ||||| || || || |||||||||||||| || | || || || || || Sbjct 1332779 AGAGTCCTGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGA 1332838 Query 82704 ATTCCT 82709 || ||| Sbjct 1332839 ATACCT 1332844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816532447472