Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq837 93.3 4e-14 seq847 84.2 2e-11 >seq837 Length=2853963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 134493 CTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGT 134551 ||||| | || ||| ||||| | ||||| ||||| || |||||||| || |||| || | Sbjct 1825312 CTGAGCCTCAGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTT 1825253 Query 134552 GTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC 134611 || | || || || |||||||| ||||||||||| ||||||||||| || || || || Sbjct 1825252 CTGCCA-TCTTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATCAGGAGGAATACC 1825194 Query 134612 TTCTTTTTCTTGA 134624 || || || ||| Sbjct 1825193 CTCCTTGTCCTGA 1825181 >seq847 Length=8161804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || || | || ||||| || ||||| |||||||| |||||||||||| | Sbjct 3587124 CCTCCTCGCAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCC 3587183 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || || || ||||| ||||| || | ||||||||| || || || Sbjct 3587184 AATGTTCGGCCGTCCTCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGAGGG 3587243 Query 134607 ATGCCT 134612 |||||| Sbjct 3587244 ATGCCT 3587249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393042776960