Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq82 98.7 1e-15 >seq82 Length=1542430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 || ||| || |||||| ||||| ||| | |||||||||||| || || | || || Sbjct 614174 TATACAGTAGGCAGGCAAAGTCTGTATGCAAGCCCTCATCTCTGCTGATCAGCTCATTGC 614233 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-AT 39724 ||||| ||||||||||| ||||| | || |||||||| || |||| |||| ||| | Sbjct 614234 TGAATGTCAGTCCAGGCATGAGACCCCTTTTCTTGAGCCAGAAAATGG-AGCAGAAGCTT 614292 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA 39784 ||| ||| ||||||||||| ||||| | ||||| | |||| | |||| || Sbjct 614293 CCACTGAAGTGAATGCCTTCTACGCAAGCAAAGCCGACAAGCCGCTCTGCAAAACTGGTG 614352 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837 | | ||||||| ||||| |||||||| | || ||||| || || Sbjct 614353 CTACTGCCTATCCACCGTAAAGCCCAGTCAGCTTTGTGCTGCACACAGGGAAT 614405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901518766720