Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq846 107 2e-18 >seq846 Length=7821234 Score = 107 bits (118), Expect = 2e-18 Identities = 202/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| ||||| ||||| || | || || || ||||||||| ||| | || || Sbjct 3745271 CTGACGGTCAAAACGACCGGGTCTGAGCAGAGCTGCATCAAGGACGTCAGGCCTGTTGGT 3745212 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || | ||||| | ||| || | ||||| |||||||||||||| | || || Sbjct 3745211 GGCTGCCAGGACAATGACACCAGTGTTGCCCTCAAAGCCATCCATCTCTGTAAGCAGCTG 3745152 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 9697 ||| || ||||| |||| |||||||| || || ||| ||||||| | ||| Sbjct 3745151 GTTGATGGTTTGCTCCCTCTCATCATT-GCCACCA-CCCATGCCAGCACCTCTTTGGCGA 3745094 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTC 9756 || || |||||||||||||||||||| |||||||| || || ||| | || | | Sbjct 3745093 CCAACAGCATCAATCTCATCAATGAACACGATGCAGGGGGCTTTCTTCTTG-GCAGCAGC 3745035 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 |||||| || || | || |||||| || ||||||||||| |||| Sbjct 3745034 AAAGAGGCTGCGCACTCTGCGGGAGCCCACCCCCACAAACATCTCTTCAAA 3744984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254617435520