Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq845 96.9 1e-14 seq351 95.1 4e-14 seq238 91.5 4e-13 seq846 89.7 2e-12 seq837 87.8 5e-12 seq838 84.2 7e-11 >seq845 Length=2227659 Score = 96.9 bits (106), Expect = 1e-14 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || |||||||| |||||||| || || || ||||| |||| | ||| || ||||| || Sbjct 1814204 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGACCATCCTCC 1814263 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCT 140636 || || |||||||||||||| ||||| ||||| || ||||| || ||| Sbjct 1814264 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCGGGAGGGATACCT 1814311 Score = 86.0 bits (94), Expect = 2e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 423959 ATCCTGCTCCGTTAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAATGTCACTGGT 424018 ||||| || | |||||||| ||| ||||||||||||||||||||||||| ||| ||||| Sbjct 2058722 ATCCTTCTTCCATAGCTCAGCTGGCTAGAGCGTGCGGCTGTTAACCGCAAGGTCGCTGGT 2058663 Query 424019 TCGATCCCAG 424028 |||| ||||| Sbjct 2058662 TCGAGCCCAG 2058653 >seq351 Length=1596 Score = 95.1 bits (104), Expect = 4e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 377457 GCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATT 377516 ||| ||||||||| | || |||||| || | || ||||||||||||||||| || || Sbjct 776 GCGAGGCACACCAAGGGTGACATTC---TTGGCTGAGACACCAGCAAAGTGGAATGTGTT 832 Query 377517 AAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTC 377576 || || | || ||||||||||| || || ||||| ||||| | ||||| |||||| Sbjct 833 GAGGGTCATCTGGGTAGTGGGCTCTCCTATGGACTGAGCTGCCACTGTGCCAATCATTTC 892 Query 377577 TCCAGGAT 377584 ||||||| Sbjct 893 ACCAGGAT 900 >seq238 Length=1739233 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || ||||| || || ||||| | |||||| || ||||| ||||||||| ||||| Sbjct 629239 ACCGTGCCAGCATACTTCAATGACTCACAGCGTCAAGCCACAAAGGATGCTGGCCGCATT 629298 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | |||| || | || |||||||| ||||||||||| | | || || || Sbjct 629299 GCTGGCCTGGATGTGCTGCGTATCATTAATGAGCCCACTGCTGCTTCCTTGGCTTACGGC 629358 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | || || | ||| ||| | | || | | | ||||| || ||||||||||| Sbjct 629359 TTCGAGAAGAAGAG----CAATGAGACCATCT--TGGTGTTTGACTTGGGTGGTGGTACC 629412 Query 349799 TTTGATGTATCACTACT 349815 ||||||||||| |||| Sbjct 629413 TTTGATGTATCTGTACT 629429 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 || ||||||| ||| ||||| || || | || || | || || || ||||| || || Sbjct 1332704 ACAAATATTTG-CATTCCACCGCGCAAACGAAGCACCAAGTGCAGTGTTGACTCCTTCTG 1332762 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 ||||| ||||| | | || | || || ||||| || |||||||||||||| ||||| Sbjct 1332763 GATATTGTAATCTGCCAGAGTCCTGCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGACG 1332822 Query 140615 TTGCTGATCAGGAGGAATTCCT 140636 ||||| ||||| ||||| ||| Sbjct 1332823 CTGCTGGTCAGGGGGAATACCT 1332844 >seq846 Length=7821234 Score = 89.7 bits (98), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 235887 TAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCA 235946 || |||||||||| ||| ||||||| ||||||||||||||||||||||||| ||| || Sbjct 823719 TAAGGGGATGTAGCTCATATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACAGGGTTCG 823660 Query 235947 AAACCCAGCATCTCCATACAATGA 235970 | ||| ||||||||| ||||| Sbjct 823659 ATTCCCTGCATCTCCAGTAAATGA 823636 >seq837 Length=2853963 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140523 CTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCA 140582 || || || || || | || ||||| || || || || ||||| | | |||| ||| Sbjct 1825306 CTCAGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTTCTGCCA 1825247 Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642 ||||| |||||||| |||||||| || | || ||||||||||||||||| || || || Sbjct 1825246 TCTTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATCAGGAGGAATACCCTCCTTG 1825187 Query 140643 TCCTGA 140648 |||||| Sbjct 1825186 TCCTGA 1825181 >seq838 Length=3057357 Score = 84.2 bits (92), Expect = 7e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 349231 TTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAG 349290 |||||||| || ||||||||||| ||||| || || |||||||| ||| || ||| | Sbjct 2110244 TTGTGTTGGCGTATGGCAAAATGACCGTGTGGAGATCATTGCAAACGATATGGGCAACCG 2110303 Query 349291 AACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAA 349350 || || ||||||||||||| || || || | ||||| | ||||| || | ||||| Sbjct 2110304 CACTACCCCATCATACGTTGGCTTCACAGACAGCGAGCGACTTATTGGGGACGCCGCAAA 2110363 Query 349351 AAATCA 349356 || || Sbjct 2110364 GAACCA 2110369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515237936760944