Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq845 118 1e-21 seq847 100 3e-16 seq837 91.5 2e-13 seq238 87.8 2e-12 >seq845 Length=2227659 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||||| || |||||||| ||||| || ||||||| ||| Sbjct 1814310 GGTATCCCTCCCGACCAGCAGCGTCTTATCTTTGCTGGAAAGCAGCTGGAGGATGGTCGC 1814251 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || |||||||| |||| ||||| || || |||||||| || || ||||| ||| Sbjct 1814250 ACACTTGCTGACTATAACATCCAGAAGGAGTCTACCCTTCATCTGGTGTTACGTCTGCGC 1814191 Query 27628 GGTGG 27632 || || Sbjct 1814190 GGAGG 1814186 >seq847 Length=8161804 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||||| || ||||| || |||||||| ||||| | || Sbjct 3587248 GGCATCCCTCCTGACCAGCAGCGTCTTATCTTTGCCGGCAAGCAACTAGAGGACGGCCGA 3587189 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | || ||||| || |||||||||| ||||||||||| || || | ||||| || Sbjct 3587188 ACATTGGCCGACTACAACATCCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTCTGCGA 3587129 Query 27628 GGTGG 27632 || || Sbjct 3587128 GGAGG 3587124 >seq837 Length=2853963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||||||||||||||| |||||||| || |||||||| | ||||||||||| || ||||| Sbjct 1825181 TCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGCGCTTGATTTTTGCTGGCAAACAACT 1825240 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || |||| | || || ||||| || || | || ||||| ||||| Sbjct 1825241 AGAAGATGGCAGAACGCTGGCAGATTACAACATACAGAAGGAGTCCAC 1825288 >seq238 Length=1739233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| || |||||||| ||||| || ||||| | | Sbjct 1332843 GGTATTCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCAGG 1332784 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||| || ||| |||| ||||| || || || || | || | ||| | ||| Sbjct 1332783 ACTCTGGCAGATTACAATATCCAGAAGGAGTCAACACTGCACTTGGTGCTTCGTTTGCGC 1332724 Query 27628 GGTGGA 27633 |||||| Sbjct 1332723 GGTGGA 1332718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304354709760