Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq847 98.7 2e-15 seq837 96.9 8e-15 seq845 93.3 1e-13 >seq847 Length=8161804 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||||||||| ||||||||||| || || || | || | || || Sbjct 3587139 AGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCCAATGTTCGGCCGTCC 3587198 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || || |||||||| || |||||||| || || ||||||||||| Sbjct 3587199 TCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGAGG 3587242 >seq837 Length=2853963 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || ||||| | |||||||| || || ||||| ||||| || || || || Sbjct 1825309 AGCCTCAGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTTCTG 1825250 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || || ||||| || || || | ||| || || |||||||||| || ||| Sbjct 1825249 CCATCTTCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATCAGGAGGAATACCCTCC 1825190 Query 211017 TTGTCCTG 211024 |||||||| Sbjct 1825189 TTGTCCTG 1825182 >seq845 Length=2227659 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| || ||||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 1814204 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGACCATCCTCC 1814263 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||| || || |||||||| || || ||||| ||||| Sbjct 1814264 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCGGGAGG 1814304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159139405813520