Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq833 134 3e-26 seq847 113 9e-20 seq837 98.7 2e-15 seq846 87.8 4e-12 seq845 87.8 4e-12 seq82 87.8 4e-12 seq15 87.8 4e-12 >seq833 Length=348647 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 316984 TCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAAC 317043 |||| ||||||||| || ||| |||| ||| ||||| | ||||| || |||||| Sbjct 100824 TCGATGTCATGCTCCACGTATACAGTGCGCAGCTGGTCCTTGGGTGGGAAGCCCTCCAAC 100883 Query 317044 TGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGA 317103 || || || |||| | |||||| || || |||||||||||||| ||||||||||| ||| Sbjct 100884 TGCCCATTAGCAATGGACCTCATGAGGGTGGACTTGCCAGCACCGTTGGGGCCGCACAGA 100943 Query 317104 CCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162 || || || || || |||||| | || |||| |||||| || |||||||| ||||| Sbjct 100944 CCGTAGCGCTTGCCACGCTTCAGGTGAAGGCGGGCGTTGTTGAGCAGAATCTTGCCACC 101002 Score = 113 bits (124), Expect = 9e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 316166 TGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGAT 316225 |||| ||||| || || || ||||| |||||| | |||||| ||| |||| | || | Sbjct 99271 TGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAAGTGCT 99330 Query 316226 CCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 316285 ||| |||||||||||||||||||| || ||||| || | ||||| |||||| ||||||| Sbjct 99331 GCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTGCTTCC 99390 Query 316286 AAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTC 316345 | || | || | | | || |||| || || || |||| || || | || || | Sbjct 99391 AGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGACTTGC 99450 Query 316346 CCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAG 316385 | || || || |||| | |||| | | | |||||||| Sbjct 99451 CAGCACCATTGGCACCAATGACAGCCACACGCGAGTTGAG 99490 >seq847 Length=8161804 Score = 113 bits (124), Expect = 9e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 316166 TGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGAT 316225 |||| ||||| || || || ||||| |||||| | |||||| ||| |||| | || | Sbjct 6244829 TGTCCTCACCAGAGGCGTACCGCCACGCGATGTAGTCATTGGGGGTCTTGTCCAAGTGCT 6244770 Query 316226 CCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 316285 ||| |||||||||||||||||||| || ||||| || | ||||| |||||| ||||||| Sbjct 6244769 GCTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAGGCCACACGCAGATTTGGGTGCTTCC 6244710 Query 316286 AAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTC 316345 | || | || | | | || |||| || || || |||| || || | || || | Sbjct 6244709 AGACAGTGCCCTCATTGGTCTCCAGCTCACCAGTGAGCAGCTTGATCATGGTGGACTTGC 6244650 Query 316346 CCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAG 316385 | || || || |||| | |||| | | | |||||||| Sbjct 6244649 CAGCACCATTGGCACCAATGACAGCCACACGCGAGTTGAG 6244610 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| ||||| || || || | ||| || ||||||||||||||||| || Sbjct 3587124 CCTCCTCGCAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCC 3587183 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 | || ||||| ||||||||||| || ||||||||||| | ||| || |||||| Sbjct 3587184 AATGTTCGGCCGTCCTCTAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCA 3587237 >seq837 Length=2853963 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || ||||| || || ||| || || || |||||||| || || ||||| | |||||| Sbjct 1825303 AGCACCAGGTGCAATGTGGACTCCTTCTGTATGTTGTAATCTGCCAGCGTTCTGCCATCT 1825244 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 ||||||||||| || ||||| ||||| || || || ||| ||||||||||||||||| Sbjct 1825243 TCTAGTTGTTTGCCAGCAAAAATCAAGCGCTGCTGATCAGGAGGAATACCCTCCTTGTCC 1825184 Query 283008 TG 283009 || Sbjct 1825183 TG 1825182 >seq846 Length=7821234 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||| |||||||||| ||||| || ||||||||||| |||| |||||||||||||||| Sbjct 18973 CGCATTCGTATAGTGGTCAGTATTCCCGCCTGTCACGCGGGAGGCCGGGGTTCAATTCCC 18914 Query 168809 CGATTCGTCGC 168819 |||| || ||| Sbjct 18913 CGATGCGGCGC 18903 >seq845 Length=2227659 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||| || |||||||| ||| || || | ||||||||||| || | ||||| Sbjct 2134891 TACCCTCCTTATCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCGGACGACTCGACC 2134833 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || || ||||| || |||| ||||| ||||| |||||||| || Sbjct 2134832 TCGAGTGTAATGGTCTTGCCTGTCAGGGTCTTTACGAAAATCTGCATGTT 2134783 >seq82 Length=1542430 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||| |||||||||| ||||| || ||||||||||| |||| |||||||||||||||| Sbjct 539542 CGCATTCGTATAGTGGTCAGTATTCCCGCCTGTCACGCGGGAGGCCGGGGTTCAATTCCC 539483 Query 168809 CGATTCGTCGC 168819 |||| || ||| Sbjct 539482 CGATGCGGCGC 539472 >seq15 Length=833633 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||| |||||||||| ||||| || ||||||||||| |||| |||||||||||||||| Sbjct 570765 CGCATTCGTATAGTGGTCAGTATTCCCGCCTGTCACGCGGGAGGCCGGGGTTCAATTCCC 570824 Query 168809 CGATTCGTCGC 168819 |||| || ||| Sbjct 570825 CGATGCGGCGC 570835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727827178592