Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq200 102 2e-16 seq67 95.1 3e-14 seq82 84.2 5e-11 >seq200 Length=180262 Score = 102 bits (112), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 318995 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 319054 |||||||||| ||||| || | ||| || || | |||||| ||| |||| || || | Sbjct 15817 TGTCTTCACCAGAGGCGTATCTCCACGCAATGTAGTCGTTGGGGGTCTTGTCTAGGTGCT 15758 Query 319055 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 319114 ||| ||||||||||| |||||||| |||||||| || | | || || || ||||||| Sbjct 15757 GCTCAATGTGGTGGAATGCATGCTGAGCCACGTAGGCCACTCTCAAGTTGGGGTGCTTCC 15698 Query 319115 AAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAAT 319160 | || | || ||| ||||| | ||| ||||||| |||||| Sbjct 15697 ACACTGTGCCTTCATTGGTTTCCAGCTCTCCAGTGAGCAGCTTAAT 15652 >seq67 Length=277217 Score = 95.1 bits (104), Expect = 3e-14 Identities = 297/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| || || || || | || | ||||| ||||| || | || ||| |||||| Sbjct 72420 TTTGCAGAACGGCTAGTGGGCTTTGCTTGTGTGGAAGGAATCCACTTCAGCGGCAGTTTC 72479 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||| ||||||| ||||| ||| ||| ||||||| || ||| | || ||| Sbjct 72480 TGCTCCATCTTCTGGCTTAAGAAGCGAGGATTGATGCCAGGTCTCACATTCAGCAATGAG 72539 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAA--AG 230349 || ||||| | || || || | ||| | | || | | |||| |||| ||| || Sbjct 72540 TTGATCAGCAGGGATGAAGGCTTGCATACAGACTTTG-CATGCTTGCTGTA--CAATCAG 72596 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || || |||| |||| || ||||| || | || | || ||||| Sbjct 72597 CTGCAAAACAGGCTATCACAGGAGACTGTACATGCTATAGTGGGCGATGCAGTGAGGCTG 72656 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || || |||||| |||||| || | | ||| | || |||| ||||| || || || Sbjct 72657 GAGAATGAGTTCTGTTGTGAGGCGCT-CAGTGTGTCACTGGTTGGAATGAATGCAGAGCT 72715 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| |||||||||| || || || |||||| | || | || | || || || || Sbjct 72716 GATGTCACAGTACATCAGATATGTGGCAGACCGCCTGTTGATAGCTTTGGGGTATGACAA 72775 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 | | ||| | | |||||||||| | |||||| | || || || ||||| ||||| Sbjct 72776 GCTCTTCAATGCCAGCAACCCCTTTGACTGGATGGAGATGATCTCTCTACAAGGCAAGAC 72835 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 ||||||||| || | | | || |||||||||| Sbjct 72836 CAACTTCTTTGAGAGGAGAGTTGGTGACTATCA 72868 >seq82 Length=431385 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||| |||||||||| || ||||||| || |||| |||||||||||| Sbjct 407740 TGCCCGGATAGCTCAGTTGGTAGAGCGCTAGGCTTTTAACCTAGTGGCCGTGGGTTCGAG 407681 Query 165769 CCCCACGATGGGCA 165782 |||||| ||||| Sbjct 407680 CCCCACTTCGGGCA 407667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814824368510