Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq264 131 2e-25 seq33 93.3 4e-14 >seq264 Length=364395 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || ||||| | | Sbjct 32439 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 32498 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 32499 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 32558 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || |||||||||||||| || | ||||| || ||||||||| Sbjct 32559 CAGCGTCTGATCTTTGCTGGCAAACAGCTGGAGGATGGACGCACTCTGGCTGACTACAAC 32618 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 || |||||||| |||| || || || |||||||| || | || ||| ||| Sbjct 32619 ATTCAGAAGGAATCCACCCTTCACCTTGTGTTGCGTCTGCGTGGTGGCTGCT 32670 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || || || | | Sbjct 31567 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTTGAGTCTTCA 31626 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 31627 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 31686 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||| |||| || | |||||| | ||||||||| Sbjct 31687 CAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTACAAC 31746 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||| |||| || | || ||| Sbjct 31747 ATCCAGAAGGAGTCCACCCTTCATCTGGTGCTGCGTCTGCGTGGTGGC 31794 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || ||||||| ||| ||||| ||||| || |||| ||||| || |||| Sbjct 31116 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTTGCCGAC 31175 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||||| |||| |||||| | || |||| Sbjct 31176 TACAACATCCAGAAGGAGTCCACACTGCATTTGGTCCTGCG 31216 >seq33 Length=490745 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || || || | | Sbjct 197307 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACAATCACACTGGAGGTGGAGTCATCA 197366 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| |||||||| || | |||||| Sbjct 197367 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 197426 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | ||||| | || |||||| Sbjct 197427 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCTGATTACAAC 197486 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 197487 ATCCAGAAGGAGTCCACCCTCCACCTGGT 197515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || || | | Sbjct 195943 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATCA 196002 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| || || | |||||| Sbjct 196003 GACACCATTGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 196062 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| ||||| || || | || || | ||||||||| Sbjct 196063 CAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTACAAC 196122 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || |||||||| |||| || ||||| ||| |||| || | || ||| Sbjct 196123 ATTCAGAAGGAATCCACCCTCCATCTGGTGCTGCGTCTGCGTGGTGGC 196170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| || ||||| ||||| || || | ||| Sbjct 195817 GGCATTCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGC 195876 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||| ||||||||| |||| || || | |||||||| |||| Sbjct 195877 ACTCTTGCTGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTGTTGCGTCTGAGA 195936 Query 40912 GGCGGC 40917 || ||| Sbjct 195937 GGAGGC 195942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 196615 GGTATCCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 196674 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || | ||||||||||||||||||||| |||| ||||| | ||| |||| || | Sbjct 196675 ACTTTGGCAGACTACAACATCCAGAAGGAGTCCACATTGCATTTGGTGCTGCGTCTGCGT 196734 Query 40912 GGCGGC 40917 || ||| Sbjct 196735 GGAGGC 196740 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || | || | || ||||| ||||| || |||| || Sbjct 195471 GGCATCCCACCTGACCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAGGACGGACGT 195530 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||||||||||||||||||| |||| || ||||| || |||| Sbjct 195531 ACACTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTGGTCCTGCG 195583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214839957520