Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq33 132 4e-26 seq264 125 6e-24 >seq33 Length=490745 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || ||||||||||| || |||||| |||||| Sbjct 197515 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCA 197456 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || ||||| |||||||||||||| | Sbjct 197455 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 197396 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | || | || ||| Sbjct 197395 ATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTG 197336 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || || ||||| ||||||||| || Sbjct 197335 CCAGTCAGGGTCTTGACAAAGATCTGCATGCCT 197303 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| |||| || || || || ||||||||||| || || ||| || ||| Sbjct 196155 CAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCCATC 196096 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| |||| | |||||||| || ||||| || ||||||||||| Sbjct 196095 CTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTC 196036 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | || | |||||| | ||| || || | || | || Sbjct 196035 CTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGT 195976 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| |||||||| || ||||| || |||||| || Sbjct 195975 CTTGCCAGTCAGAGTCTTGACAAAGATTTGCATGCCT 195939 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| ||| ||||| || ||||||||||| || | |||||| ||| Sbjct 195927 CAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCATC 195868 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||| ||||| || ||||| |||| ||||||||||| || || || ||||| Sbjct 195867 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGCC 195817 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||||| || | ||| ||||| || || |||||||| || | Sbjct 196739 CCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGCC 196680 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| |||||| ||||| || ||||| |||| ||||||||||| || ||||| Sbjct 196679 AAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 196620 Query 118632 ATGCC 118636 || || Sbjct 196619 ATACC 196615 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||||||| | || |||||||| || |||||||| || | Sbjct 197305 CCTCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCC 197246 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| ||||| || ||||| |||| ||||||||||| || ||||| Sbjct 197245 AGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 197186 Query 118632 ATGCC 118636 || || Sbjct 197185 ATACC 197181 >seq264 Length=364395 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||| | ||| | || || || || ||||||||||| || || |||||| ||| Sbjct 32651 CAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATC 32592 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| ||||| |||| ||||||||||| || ||||| |||||||||||||| Sbjct 32591 CTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 32532 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | || | |||||| | ||||||||| | || | || Sbjct 32531 CTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGT 32472 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || ||||| || |||||| Sbjct 32471 CTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || ||||| || || |||||||| || || ||||| ||| Sbjct 31779 CAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATC 31720 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | ||| || ||||| |||| ||||||||||| || ||||| |||||||||||||| Sbjct 31719 CTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 31660 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| |||||| | ||| ||||| | || | || Sbjct 31659 CTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTGATGGT 31600 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||||| || || ||||| || |||||| Sbjct 31599 CTTGCCGGTCAAGGTCTTGACAAAGATTTGCATG 31566 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||| ||||| || || |||||||| ||| | |||||| |||||| Sbjct 31210 ACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCGTCCTCG 31151 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || || ||| |||||||||||||||| || ||||| || || Sbjct 31150 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACC 31104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826820492484