Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq33 118 1e-21 seq264 114 1e-20 >seq33 Length=490745 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| ||| | ||| ||||| ||||| ||||| || |||| ||| || | Sbjct 196158 ACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCC 196099 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || | ||||||||||| | || | | |||||| Sbjct 196098 ATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTT 196039 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | ||||| | | | ||||| || ||||| || | |||| Sbjct 196038 GTCC-TGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGA 195980 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| |||||||||||||| Sbjct 195979 TGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||||| ||| || | || || |||||||| ||||| || Sbjct 197498 CTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 197439 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | || |||||||||| ||| | || | |||| Sbjct 197438 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACAT 197380 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | ||||| || ||||| || || ||||| | Sbjct 197379 TGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGA 197320 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 197319 CAAAGATCTGCAT 197307 Score = 105 bits (116), Expect = 8e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||||||||||| || | |||| |||||| ||||| ||||| ||||| Sbjct 195941 CCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCA 195882 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||| || | || || |||||||| ||||| || || || ||||||||||| Sbjct 195881 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 195829 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| |||||||||||||||| |||||| || || ||||| || ||| Sbjct 196739 CCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGCC 196680 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 | ||| || | || || |||||||| ||||| || || || ||||||||||| Sbjct 196679 AAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 196627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| |||||| |||| ||| ||| || || || ||||| |||||| Sbjct 197305 CCTCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCC 197246 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||| || | || || |||||||| ||||| || || || ||||||||||| Sbjct 197245 AGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 197193 >seq264 Length=364395 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | || | ||| ||||| ||||| ||||| ||||||||||| || | Sbjct 32654 ACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCC 32595 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || ||||| || || || ||||||||||| | || | || |||||| Sbjct 32594 ATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTT 32535 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | |||| | | | ||||| || || || || | |||| Sbjct 32534 GTCC-TGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGA 32476 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||||| |||||||||||||| Sbjct 32475 TGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| ||| | ||| |||||| || || ||||| ||||||| || || | Sbjct 31782 ACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCC 31723 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| ||||| || || || ||||||||||| | || | || |||||| Sbjct 31722 ATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTT 31663 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | |||| | | | ||||| || || || || | |||| Sbjct 31662 GTCC-TGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTGA 31604 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||||| |||||||||||||| Sbjct 31603 TGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||||||| |||| |||||| || || ||||| || || ||||| || | Sbjct 31217 ACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACC 31158 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||| || |||||||| || ||||| ||||| ||||||||||| Sbjct 31157 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 31116 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| |||||||||| |||||| ||||| ||||| ||||| ||||| || | || || Sbjct 31547 ACCAGATGCAATGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTACGACCATCCTCG 31488 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 |||||||| ||||| || || | ||||||||||| Sbjct 31487 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTC 31453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812760993560