Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq264 120 2e-22 seq33 104 2e-17 >seq264 Length=364395 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || || | ||| || ||| |||||||||||||||||||| Sbjct 32666 GCCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGC 32607 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| ||||| || || || |||| ||||| ||||| ||||| Sbjct 32606 CAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 32547 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| || ||| || | | | |||| | ||| || Sbjct 32546 GATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGAC 32487 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || |||||||| |||| ||||| ||||||||||||||| Sbjct 32486 CTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 31775 ACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCC 31716 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || |||| ||||| ||||| ||||| | |||||||||||| | Sbjct 31715 AACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 31656 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| || || |||||| Sbjct 31655 ATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTGATGGTCTTG 31596 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| ||||||||||||||| Sbjct 31595 CCGGTCAAGGTCTTGACAAAGATTTGCATG 31566 >seq33 Length=490745 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||| || || ||| | || || Sbjct 197515 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCA 197456 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| ||||| | |||||||||||| | Sbjct 197455 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 197396 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||||| || || |||||| Sbjct 197395 ATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTG 197336 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| |||||||| |||||| Sbjct 197335 CCAGTCAGGGTCTTGACAAAGATCTGCATG 197306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071940259217