Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq264 105 6e-18 seq33 96.9 3e-15 >seq264 Length=364395 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| ||||| || ||||| | || ||||| | || Sbjct 31566 CATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTTGAGTCTTC 31625 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 31626 AGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 31685 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| || || || || || || Sbjct 31686 GCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTACAA 31745 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||||||||| || Sbjct 31746 CATCCAGAAGGAGTCCACCCTTCATCTGGTGCT 31778 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| ||||| || ||||| | || || || | || Sbjct 32438 CATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTC 32497 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 32498 AGACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 32557 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || || |||||||||||| |||| || | | | ||| || || || | Sbjct 32558 GCAGCGTCTGATCTTTGCTGGCAAACAGCTGGAGGA-TGGACGCACTCTGGCTGACTACA 32616 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||| || ||||| || ||||| || || Sbjct 32617 ACATTCAGAAGGAATCCACCCTTCACCTTGT 32647 >seq33 Length=490745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||||||||| ||||| || ||||| | || || || | || Sbjct 195942 CATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATC 196001 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | |||||| | || ||||||||| || | || || ||||| Sbjct 196002 AGACACCATTGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCA 196061 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || |||||||| ||| | || || ||| || || || || Sbjct 196062 GCAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTACAA 196121 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || || |||||||| || Sbjct 196122 CATTCAGAAGGAATCCACCCTCCATCTGGTGCT 196154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || || || | || Sbjct 197306 CATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACAATCACACTGGAGGTGGAGTCATC 197365 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 197366 AGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 197425 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || ||| || ||||| || Sbjct 197426 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTTTGGCTGATTACAA 197485 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| ||| | ||| | || || Sbjct 197486 CATCCAGAAGGAGTCCACCCTCCACCTGGTTCTTCGTCTGCGTGGTGG 197533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762627701840